# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.16e-69 1r9oA 477 4.42e-68 a.104.1.1 104878 1tqnA 486 4.89e-68 a.104.1.1 107238 3c6gA 479 2.40e-67 2hi4A 495 1.10e-66 2ve3A 444 5.68e-66 1x8vA 455 1.88e-65 a.104.1.1 114968 3b6hA 498 4.89e-65 1po5A 476 7.61e-65 a.104.1.1 94963 1jpzA 473 7.65e-65 a.104.1.1 67069 1h5zA 455 8.05e-65 a.104.1.1 90622 1zo4A 473 1.30e-64 3b98A 475 1.74e-64 2cibA 455 2.14e-64 2iagA 482 7.65e-63 2ij2A 470 1.80e-62 a.104.1.1 137449 1izoA 417 4.45e-56 a.104.1.1 83851 2zbxA 412 1.65e-55 3bujA 397 7.90e-55 1yrcA 414 1.41e-54 a.104.1.1 123917 1gwiA 411 3.33e-54 a.104.1.1 76364 3bdzA 397 4.29e-54 1z8oA 404 5.57e-54 a.104.1.1 124722 1cptA 428 6.38e-54 a.104.1.1 18968 1cpt 412 7.04e-54 2fr7A 412 9.28e-54 1t2bA 397 1.05e-53 1uedA 406 2.98e-53 a.104.1.1 99256 1odoA 408 8.35e-53 a.104.1.1 92783 1n97A 389 1.17e-52 a.104.1.1 80335 1s1fA 406 1.30e-52 a.104.1.1 112008 1n40A 396 2.14e-52 a.104.1.1 79977 1q5dA 419 2.31e-52 a.104.1.1 95891 1jfbA 404 3.31e-52 a.104.1.1 66624 2z3tA 425 4.49e-51 2uuqA 414 1.31e-50 1lfkA 398 8.66e-49 a.104.1.1 77926 2rfbA 343 1.25e-47 1io7A 368 3.71e-44 a.104.1.1 18971 1gntA 553 0.2667 e.26.1.1 70290 1nd6A 354 3.222 c.60.1.2 80407 1gnlA 544 3.903 e.26.1.1 70287 1wywA 230 4.896 2hhcA 330 9.455 2b4uA 335 10.32 1yp2A 451 15.40 b.81.1.4,c.68.1.6 123798,123799 1h3fA 432 16.67 c.26.1.1,d.66.1.4 76631,76632 2gagA 965 23.04 1tzfA 259 27.11 c.68.1.13 107476 2yzvA 303 27.20 2csgA 424 27.64 b.82.2.12 130768 2e55A 208 31.38 3cmnA 372 31.81 2e1vA 454 35.19 1ezwA 349 38.87 c.1.16.3 29558 2ovkC 159 39.76 1xesA 413 41.36 3d1cA 369 44.31 1uhnA 189 45.32 a.39.1.5 99399 1t08A 519 46.89 a.118.1.1 112190 2b82A 211 47.41 c.108.1.12 128057 1s4bP 674 47.73 d.92.1.5 105252 1xfcA 384 47.81 1xm9A 457 49.17 a.118.1.24 122142 1i5nA 146 50.31 a.24.10.3 61805 1r0kA 388 50.50 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1jihA 531 50.64 d.240.1.1,e.8.1.7 90374,90375 2cvbA 188 51.01 c.47.1.10 130859 2ot3A 274 54.26 a.222.1.1 139311 2vg0A 227 54.57 2yveA 185 54.76 2ct9A 208 58.34 1wdyA 285 58.75 d.211.1.1 114541 1vfsA 386 59.64 b.49.2.2,c.1.6.1 108584,108585 1v0jA 399 63.76 1oxxK 353 64.31 b.40.6.3,c.37.1.12 93715,93716 2al1A 436 65.53 c.1.11.1,d.54.1.1 126949,126950 2it1A 362 66.55 1nhpA 447 67.32 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2qt1A 207 68.86 2yzhA 171 69.02 2f7bA 233 69.51 1t5jA 313 70.34 a.209.1.1 99125 1mdoA 393 70.39 c.67.1.4 79013 1v5vA 401 72.95 b.44.2.1,d.250.1.1 113539,113540 3bjdA 332 74.47 1e1oA 504 76.11 b.40.4.1,d.104.1.1 25258,40714 2qkoA 215 76.13 2v2fF 390 78.22 3caiA 406 78.23 1nhsA 447 78.36 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1wstA 417 80.64 c.67.1.1 121244 1g2qA 187 83.28 c.61.1.1 65117 1jdhA 529 83.44 a.118.1.1 66549 1g8iA 190 84.25 a.39.1.5 60363 1qmeA 702 87.52 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2dg6A 222 87.55 2bb6A 414 87.99 2e8vA 340 88.56