# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.46e-63 1tqnA 486 1.38e-62 a.104.1.1 107238 1r9oA 477 4.56e-62 a.104.1.1 104878 3c6gA 479 6.27e-62 1x8vA 455 3.42e-61 a.104.1.1 114968 2hi4A 495 4.48e-61 1po5A 476 5.86e-61 a.104.1.1 94963 1h5zA 455 1.28e-60 a.104.1.1 90622 3b6hA 498 4.85e-60 2ve3A 444 5.36e-60 3b98A 475 5.40e-60 2cibA 455 9.75e-60 1jpzA 473 1.57e-59 a.104.1.1 67069 1zo4A 473 1.97e-59 2iagA 482 8.29e-58 2ij2A 470 1.49e-57 a.104.1.1 137449 2zbxA 412 7.34e-52 1izoA 417 1.58e-51 a.104.1.1 83851 3bdzA 397 7.00e-51 3bujA 397 1.66e-50 1gwiA 411 2.39e-50 a.104.1.1 76364 1cpt 412 3.15e-50 2fr7A 412 3.51e-50 1t2bA 397 3.75e-50 1z8oA 404 4.96e-50 a.104.1.1 124722 1yrcA 414 6.95e-50 a.104.1.1 123917 1cptA 428 1.46e-49 a.104.1.1 18968 1q5dA 419 1.62e-49 a.104.1.1 95891 1jfbA 404 2.16e-49 a.104.1.1 66624 1s1fA 406 4.20e-49 a.104.1.1 112008 1uedA 406 5.02e-49 a.104.1.1 99256 1n40A 396 1.52e-48 a.104.1.1 79977 1n97A 389 1.77e-48 a.104.1.1 80335 2z3tA 425 2.34e-48 2uuqA 414 8.25e-48 1odoA 408 9.15e-48 a.104.1.1 92783 1lfkA 398 2.69e-45 a.104.1.1 77926 2rfbA 343 8.13e-44 1io7A 368 3.74e-42 a.104.1.1 18971 2hhcA 330 1.201 1gnlA 544 5.258 e.26.1.1 70287 1knyA 253 6.503 a.24.16.1,d.218.1.1 75896,75897 1gntA 553 8.642 e.26.1.1 70290 2gaeA 346 8.800 1o69A 394 10.36 c.67.1.4 92560 2r4vA 247 10.41 1mdoA 393 10.78 c.67.1.4 79013 2dbyA 368 11.32 3bv0A 437 16.10 1v0jA 399 18.76 1tf1A 198 20.15 d.110.2.2 106826 3bjnA 165 20.88 1h3nA 878 21.08 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2b4uA 335 21.33 1a9nB 96 22.02 d.58.7.1 39165 2fgeA 995 22.88 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2ot3A 274 24.48 a.222.1.1 139311 1yp2A 451 25.85 b.81.1.4,c.68.1.6 123798,123799 1yspA 181 26.67 2go9A 161 27.63 1n2eA 300 28.83 c.26.1.4 85268 1ddzA 496 30.02 c.53.2.1,c.53.2.1 33372,33373 1nu4A 97 30.20 d.58.7.1 80731 1h7eA 245 39.27 c.68.1.13 60717 2h1yA 321 41.02 2qsxA 218 42.23 2qalC 232 43.81 2epjA 434 44.16 2e5iA 124 46.74 1tzfA 259 47.32 c.68.1.13 107476 2ae0X 345 48.15 2efeA 267 50.09 1svmA 377 50.39 c.37.1.20 112126 2gtqA 867 51.05 1c7gA 456 52.01 c.67.1.2 90415 2jc5A 259 52.64 2q4uA 272 52.72 2cuyA 305 54.92 1e1oA 504 55.13 b.40.4.1,d.104.1.1 25258,40714 1w6kA 732 55.82 a.102.4.2,a.102.4.2 114271,114272 1mkmA 249 60.60 a.4.5.33,d.110.2.2 79242,79243 2ia2A 265 60.85 2bgxA 261 60.95 a.20.1.1,d.118.1.1 128504,128505 1z47A 355 61.83 2hpkA 208 62.06 2iw0A 254 62.12 c.6.2.3 137737 2vqeC 239 63.93 2f8lA 344 64.06 c.66.1.45 133132 1i5nA 146 64.11 a.24.10.3 61805 2hraA 209 64.20 1h3fA 432 65.67 c.26.1.1,d.66.1.4 76631,76632 1nd6A 354 65.81 c.60.1.2 80407 1bco 327 66.49 1bkf 107 66.63 1bkfA 107 67.33 d.26.1.1 38382 1u79A 129 67.99 d.26.1.1 107714 3bf0A 593 69.25 1akoA 268 71.70 d.151.1.1 41779 2qkoA 215 73.57 1q6uA 245 74.18 d.26.1.1 95998 2nq2C 253 74.65 1sxjE 354 75.49 a.80.1.1,c.37.1.20 106089,106090 1g2qA 187 77.62 c.61.1.1 65117 2ct9A 208 77.88 1jihA 531 79.53 d.240.1.1,e.8.1.7 90374,90375 1pjrA 724 80.82 c.37.1.19,c.37.1.19 32391,32392 1xrkA 124 81.86 d.32.1.2 115881 1z02A 446 82.27 1ki9A 192 83.83 c.37.1.1 84404 1nrwA 288 85.33 c.108.1.10 86128 1jubA 311 86.15 c.1.4.1 90908 1n6aA 259 86.81 b.76.2.1,b.85.7.1 80121,80122 1ks9A 291 88.88 a.100.1.7,c.2.1.6 68857,68858 1uthA 315 88.98 c.94.1.1 108032 2pq6A 482 89.00