# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.67e-43 3c6gA 479 5.41e-43 1r9oA 477 1.24e-42 a.104.1.1 104878 2hi4A 495 4.69e-41 1tqnA 486 5.73e-41 a.104.1.1 107238 3b98A 475 8.37e-41 2ve3A 444 3.51e-40 1x8vA 455 4.02e-40 a.104.1.1 114968 3b6hA 498 5.15e-40 1zo4A 473 1.58e-39 2iagA 482 1.60e-39 1po5A 476 1.95e-39 a.104.1.1 94963 1h5zA 455 3.77e-39 a.104.1.1 90622 2ij2A 470 6.08e-39 a.104.1.1 137449 1jpzA 473 7.42e-39 a.104.1.1 67069 2cibA 455 1.16e-38 1t2bA 397 2.45e-35 2zbxA 412 1.09e-34 1z8oA 404 1.37e-34 a.104.1.1 124722 1cptA 428 2.23e-34 a.104.1.1 18968 3bdzA 397 3.87e-34 1cpt 412 4.55e-34 1izoA 417 6.19e-34 a.104.1.1 83851 1q5dA 419 1.72e-33 a.104.1.1 95891 1gwiA 411 3.14e-33 a.104.1.1 76364 1jfbA 404 3.33e-33 a.104.1.1 66624 1odoA 408 5.32e-33 a.104.1.1 92783 1yrcA 414 8.01e-33 a.104.1.1 123917 3bujA 397 9.25e-33 1s1fA 406 3.80e-32 a.104.1.1 112008 1n97A 389 1.18e-31 a.104.1.1 80335 2z3tA 425 1.51e-31 2fr7A 412 3.38e-31 1uedA 406 4.40e-31 a.104.1.1 99256 1n40A 396 5.88e-31 a.104.1.1 79977 2uuqA 414 4.03e-30 1io7A 368 1.78e-28 a.104.1.1 18971 1lfkA 398 7.48e-28 a.104.1.1 77926 2rfbA 343 3.96e-27 1n3lA 372 1.204 c.26.1.1 79966 2cyaA 364 6.950 2fgeA 995 7.477 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1rwhA 757 7.664 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1fxjA 331 8.023 b.81.1.4,c.68.1.5 28062,34520 1ca1 370 8.711 1wn1A 356 10.61 1lwjA 441 11.08 b.71.1.1,c.1.8.1 74303,74304 1pmiA 440 12.53 b.82.1.3 28114 2z4uA 261 13.67 1ywfA 296 14.73 c.45.1.5 124144 2qjtA 352 15.02 2vc4A 267 16.67 2iswA 323 17.08 1j1qA 261 17.83 d.165.1.1 90768 1kq3A 376 17.93 e.22.1.2 68790 2r9zA 463 17.95 1mo9A 523 18.76 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2hnhA 910 19.07 1gesA 450 20.58 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2nvwA 479 21.35 c.2.1.3,d.81.1.5 138665,138666 1mrgA 263 21.98 d.165.1.1 42183 2f2hA 773 24.27 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1hv9A 456 25.34 b.81.1.4,c.68.1.5 28060,34518 2qptA 550 25.39 1smdA 496 25.64 b.71.1.1,c.1.8.1 27768,28755 2nx9A 464 25.95 1xk7A 408 26.01 c.123.1.1 122071 1pmi 440 26.88 1h3gA 601 27.35 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 3c8mA 331 27.87 1xdiA 499 28.36 c.3.1.5,d.87.1.1 115160,115161 2gzsA 278 28.87 1uq5A 263 28.90 d.165.1.1 99778 3d1cA 369 30.83 1knwA 425 30.96 b.49.2.3,c.1.6.1 90969,90970 1y791 680 31.69 2zbwA 335 32.11 1t7lA 766 32.96 1o2dA 371 34.00 e.22.1.2 86591 1vkmA 297 34.41 c.138.1.1 108670 2pjoA 268 34.62 1exnA 290 35.04 a.60.7.1,c.120.1.2 18088,33358 1ca1A 370 35.12 a.124.1.1,b.12.1.3 19340,23648 2b4uA 335 36.02 2cybA 323 36.17 2v0hA 456 36.63 2cduA 452 37.67 1jaeA 471 38.88 b.71.1.1,c.1.8.1 27773,28760 1cydA 244 39.40 c.2.1.2 29825 1nd6A 354 40.94 c.60.1.2 80407 2gp4A 628 41.30 c.8.2.2,d.334.1.1 135448,135449 2ejwA 332 42.66 2abqA 306 42.94 c.72.1.1 126528 2dsjA 423 45.29 1m7sA 484 45.34 e.5.1.1 74574 2v1xA 591 46.20 3grsA 478 46.27 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1zmdA 474 46.90 1qtqA 553 48.64 b.53.1.2,c.26.1.1 26940,31579 2bh9A 489 49.11 1rqbA 539 49.63 a.5.7.2,c.1.10.5 105057,105058 2gh1A 301 50.02 c.66.1.49 135170 2gqwA 408 51.73 1bd0A 388 52.33 b.49.2.2,c.1.6.1 26480,28642 1fnnA 389 52.87 a.4.5.11,c.37.1.20 16129,32426 3grs 478 54.10 1bco 327 54.22 1zjaA 557 54.33 2ckwA 515 54.44 1wzlA 585 54.85 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1hzfA 367 55.20 a.102.4.4 76731 1b9bA 255 55.59 c.1.1.1 28531 2pljA 419 55.78 2p91A 285 57.18 1ukcA 522 57.90 c.69.1.17 107911 2blnA 305 59.04 b.46.1.1,c.65.1.1 128734,128735 1oaaA 259 60.67 c.2.1.2 29829 2nvaA 372 60.98 1mrjA 247 61.58 d.165.1.1 42177 1wx1A 335 61.60 1mzhA 225 61.62 c.1.10.1 79698 1ad2A 228 61.72 e.24.1.1 43353 1h2sA 225 61.84 f.13.1.1 76578 1miwA 404 63.24 a.173.1.1,d.218.1.4 79162,79163 1sh0A 510 63.59 e.8.1.4 98876 1qsgA 265 64.81 c.2.1.2 29935 1ks9A 291 65.93 a.100.1.7,c.2.1.6 68857,68858 2gciA 360 66.09 c.123.1.1 134983 1fecA 490 66.79 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2axqA 467 67.82 2yquA 455 68.77 1nhsA 447 69.29 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1l3lA 234 69.47 a.4.6.2,d.110.5.1 73541,73542 3cc1A 433 70.06 2nwqA 272 70.44 2dy1A 665 71.07 1yi8A 351 71.28 1zybA 232 72.86 a.4.5.4,b.82.3.2 125815,125816 2q8nA 460 73.52 2r44A 331 74.88 1t08A 519 76.53 a.118.1.1 112190 2h4aA 325 78.49 1f7uA 607 78.55 a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2qahA 303 78.70 2oxaA 600 78.79 1qv1A 195 80.02 a.39.1.5 96347 1oz9A 150 80.92 d.92.1.15 93808 2j0fA 482 80.93 1jubA 311 81.36 c.1.4.1 90908 2gh9A 386 81.39 1wzaA 488 82.36 b.71.1.1,c.1.8.1 121489,121490 1aquA 297 82.37 c.37.1.5 31942 1jv1A 505 83.62 c.68.1.5 71892 1qmeA 702 84.74 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1f0lA 535 85.69 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1abrA 251 86.10 d.165.1.1 42196 2bm0A 691 86.41 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2c07A 285 86.47 c.2.1.2 129577 1yw4A 341 86.88 c.56.5.7 124131 2hpsA 186 87.12 3bmaA 407 87.83 1yixA 265 88.85 c.1.9.12 123371 2r98A 456 89.73 1zk7A 467 89.92