# List of top-scoring protein chains for T0431.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 1.71e-47 a.104.1.1 107238 1w0fA 485 1.71e-47 a.104.1.1 108987 2hi4A 495 1.78e-40 3c6gA 479 1.80e-37 2nnjA 476 5.34e-36 1og5A 475 1.01e-35 a.104.1.1 86982 1r9oA 477 1.34e-35 a.104.1.1 104878 2q6nA 478 1.54e-35 1suoA 476 1.59e-35 a.104.1.1 106026 1po5A 476 1.92e-35 a.104.1.1 94963 2f9qA 479 4.04e-35 1nr6A 473 4.28e-35 a.104.1.1 92085 2p85A 476 4.85e-34 2pg6A 476 6.68e-34 2fdvA 476 7.51e-34 2pg5A 476 8.40e-34 2pg7A 476 9.02e-34 2ve3A 444 6.15e-30 1zoaA 473 6.18e-29 2uwhA 458 6.40e-29 1jpzA 473 7.29e-29 a.104.1.1 67069 1bvyA 458 7.55e-29 a.104.1.1 18943 2ij2A 470 7.61e-29 a.104.1.1 137449 2hpdA 471 7.62e-29 a.104.1.1 18939 1bu7A 455 8.03e-29 a.104.1.1 18937 1smiA 471 1.10e-28 a.104.1.1 105758 1zo4A 473 1.13e-28 2nnbA 471 1.16e-28 2ij3A 470 1.41e-28 1p0xA 455 1.62e-28 a.104.1.1 93880 1p0wA 455 1.70e-28 a.104.1.1 93878 2ij4A 470 1.70e-28 1yqpA 455 1.96e-28 1fahA 471 2.28e-28 a.104.1.1 18945 1yqoA 455 2.43e-28 a.104.1.1 123895 1jmeA 455 3.06e-28 a.104.1.1 66885 1p0vA 455 4.01e-28 a.104.1.1 93876 1h5zA 455 1.82e-24 a.104.1.1 90622 2cibA 455 2.30e-24 1u13A 455 3.54e-24 a.104.1.1 107578 1n97A 389 2.64e-18 a.104.1.1 80335 1wiyA 389 4.57e-18 a.104.1.1 114684 3b6hA 498 3.04e-16 2iagA 482 5.44e-16 1odoA 408 6.98e-16 a.104.1.1 92783 3b98A 475 1.20e-15 2vsjA 436 1.17e-14 2cd8A 436 1.24e-14 1z8qA 404 2.11e-14 1z8pA 404 3.81e-14 a.104.1.1 124723 1jipA 403 3.85e-14 a.104.1.1 66748 1gwiA 411 4.69e-14 a.104.1.1 76364 1z8oA 404 6.20e-14 a.104.1.1 124722 1jioA 403 6.27e-14 a.104.1.1 66747 1eupA 403 8.23e-14 a.104.1.1 18967 2z36A 413 1.46e-13 2z3tA 425 2.39e-13 3bujA 397 9.44e-13 1pkfA 419 1.09e-12 a.104.1.1 94829 1q5dA 419 1.16e-12 a.104.1.1 95891 1uedA 406 2.27e-12 a.104.1.1 99256 1cptA 428 5.01e-12 a.104.1.1 18968 2zbyA 412 9.94e-12 2zbxA 412 1.12e-11 2rfbA 343 1.22e-11 1ehgA 403 2.94e-11 a.104.1.1 18956 1cmnA 402 2.97e-11 a.104.1.1 18958 1ehfA 403 4.92e-11 a.104.1.1 18957 1cmjA 402 4.97e-11 a.104.1.1 18959 1xqdA 403 6.33e-11 a.104.1.1 115841 1jfbA 404 6.58e-11 a.104.1.1 66624 1gejA 403 6.62e-11 a.104.1.1 18954 1ulwA 402 6.63e-11 a.104.1.1 113296 1cl6A 402 6.69e-11 a.104.1.1 18960 2d0eA 407 1.01e-10 2d09A 407 1.02e-10 1se6A 406 1.02e-10 1s1fA 406 1.02e-10 a.104.1.1 112008 1t93A 406 1.03e-10 1izoA 417 1.65e-10 a.104.1.1 83851 1f25A 402 1.98e-10 a.104.1.1 18952 1f24A 402 2.15e-10 a.104.1.1 18953 2fr7A 412 2.67e-10 1f26A 402 2.81e-10 a.104.1.1 18951 1lfkA 398 2.89e-10 a.104.1.1 77926 1io7A 368 8.22e-10 a.104.1.1 18971 1io8A 368 8.40e-10 a.104.1.1 62618 1ue8A 367 1.27e-09 a.104.1.1 107781 2uuqA 414 7.59e-09 2nz5A 413 8.85e-09 2dkkA 411 8.90e-09 1t85A 414 4.19e-08 a.104.1.1 106650 2h7rA 414 7.97e-08 2a1mA 415 8.38e-08 a.104.1.1 126003 1qmqA 414 8.44e-08 a.104.1.1 18907 1rf9A 417 1.01e-07 a.104.1.1 111795 2zawA 415 1.01e-07 2fe6A 421 1.01e-07 a.104.1.1 133324 2frzA 414 1.01e-07 a.104.1.1 134001 1yrcA 414 1.01e-07 a.104.1.1 123917 1p2yA 420 1.02e-07 a.104.1.1 93961 1dz4A 414 1.09e-07 a.104.1.1 18903 1iwjA 415 1.09e-07 a.104.1.1 71489 3bdzA 397 1.11e-07 2gqxA 405 1.12e-07 1n40A 396 1.16e-07 a.104.1.1 79977 1c8jA 414 1.17e-07 a.104.1.1 59085 2ferA 411 1.20e-07 a.104.1.1 133350 1iwkA 415 1.27e-07 a.104.1.1 71490 1t2bA 397 1.43e-07 2qbmA 421 1.56e-07 2a1nA 415 2.18e-07 2qbnA 421 2.25e-07 2a1oA 415 2.43e-07 6cp4A 414 2.64e-07 a.104.1.1 18924 2cp4A 414 2.94e-07 a.104.1.1 18933 1gebA 415 4.08e-07 a.104.1.1 18932 2qqhA 334 18.26 1f16A 192 27.12 f.1.4.1 43400 2hqmA 479 35.47 2vn8A 375 43.44 1g5gA 481 47.98 f.12.1.1,h.3.2.1 65155,65156 3cigA 697 48.91 1q36A 427 49.12 d.68.2.2 95662 1mi4A 427 51.82 d.68.2.2 79141 1g6sA 427 52.40 d.68.2.2 39584 3bnjA 485 53.33 1fs7A 485 57.98 a.138.1.3 19691 1k8qA 377 63.12 c.69.1.6 72177 1q8yA 373 65.61 d.144.1.7 96234 1howA 373 65.62 d.144.1.7 41679 1fs9A 507 66.77 a.138.1.3 19693 2qfqA 427 68.52 1doqA 69 74.83 a.60.3.1 17968 1iruD 248 77.46 d.153.1.4 71355 2v5vA 169 78.68 7aatA 401 81.66 c.67.1.1 34250 2qftA 427 83.98 3bzwA 274 84.24 1cb5A 453 84.35 d.3.1.1 37037 1hkgA 457 84.64 i.12.1.1 46025 2dosA 176 84.98 2cb5A 453 89.45 d.3.1.1 37035