# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 3.38e-54 a.104.1.1 107238 2fdvA 476 6.90e-54 2hi4A 495 3.65e-53 1po5A 476 8.45e-53 a.104.1.1 94963 1zo4A 473 3.65e-52 2cibA 455 6.45e-52 1r9oA 477 1.70e-51 a.104.1.1 104878 1h5zA 455 5.38e-51 a.104.1.1 90622 2ij2A 470 6.35e-51 a.104.1.1 137449 3c6gA 479 9.72e-51 2iagA 482 3.68e-50 1u13A 455 4.39e-50 a.104.1.1 107578 1x8vA 455 6.62e-50 a.104.1.1 114968 1jpzA 473 7.99e-50 a.104.1.1 67069 2ve3A 444 9.75e-50 1bu7A 455 2.36e-49 a.104.1.1 18937 3b98A 475 3.18e-49 3b6hA 498 7.56e-49 1qmqA 414 1.70e-44 a.104.1.1 18907 1dz4A 414 3.56e-44 a.104.1.1 18903 1yrcA 414 8.55e-44 a.104.1.1 123917 1izoA 417 2.31e-43 a.104.1.1 83851 1n97A 389 8.81e-43 a.104.1.1 80335 1cpt 412 5.72e-42 1jfbA 404 3.29e-41 a.104.1.1 66624 1jipA 403 6.74e-41 a.104.1.1 66748 1f24A 402 9.37e-41 a.104.1.1 18953 1z8oA 404 1.03e-40 a.104.1.1 124722 1q5dA 419 2.88e-40 a.104.1.1 95891 1eupA 403 4.12e-40 a.104.1.1 18967 2d09A 407 4.53e-40 1uedA 406 5.74e-40 a.104.1.1 99256 1t2bA 397 1.09e-39 2d0eA 407 1.12e-39 1lfkA 398 1.13e-39 a.104.1.1 77926 1s1fA 406 1.41e-39 a.104.1.1 112008 1odoA 408 1.41e-38 a.104.1.1 92783 1gwiA 411 1.48e-38 a.104.1.1 76364 1n40A 396 2.37e-38 a.104.1.1 79977 2fr7A 412 9.13e-36 1io7A 368 1.52e-35 a.104.1.1 18971 1cptA 428 7.43e-35 a.104.1.1 18968 3bdzA 397 7.58e-33 2z3tA 425 2.08e-32 3bujA 397 2.82e-32 2zbxA 412 3.29e-31 2uuqA 414 7.22e-31 2rfbA 343 9.98e-30 2e5iA 124 3.759 1u5tA 233 5.085 a.4.5.54,a.4.5.54 107684,107685 2pmvA 399 7.876 1urnA 97 8.768 d.58.7.1 39153 2sqcA 631 13.23 a.102.4.2,a.102.4.2 18854,18855 2adcA 229 15.02 d.58.7.1,d.58.7.1 126582,126583 1umpA 631 15.47 a.102.4.2,a.102.4.2 99619,99620 1oiaA 95 16.50 d.58.7.1 87051 1s0pA 176 17.29 a.192.1.1 98300 1whxA 111 17.73 d.58.7.1 114654 1j79A 347 17.92 c.1.9.4 62675 1l3kA 196 18.74 d.58.7.1,d.58.7.1 73539,73540 3bu3A 306 22.98 1e1oA 504 23.40 b.40.4.1,d.104.1.1 25258,40714 1lucB 324 23.49 c.1.16.1 29548 3b4uA 294 25.18 1j5sA 463 26.97 c.1.9.8 71580 1nu4A 97 28.30 d.58.7.1 80731 2c1lA 358 28.48 2pe8A 105 28.49 2g3bA 208 30.07 a.4.1.9,a.121.1.1 134558,134559 1mp9A 198 30.09 d.129.1.1,d.129.1.1 91385,91386 1h7wA 1025 31.60 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1h7eA 245 35.27 c.68.1.13 60717 1juvA 193 36.21 c.71.1.1 90912 1reqA 727 36.93 c.1.19.1,c.23.6.1 29620,31247 1vicA 262 37.31 c.68.1.13 100756 1t5jA 313 37.57 a.209.1.1 99125 1vplA 256 38.15 c.37.1.12 113966 2ditA 112 38.41 d.58.7.1 131533 2incA 491 38.77 a.25.1.2 137524 2p36A 335 39.69 2iyvA 184 41.08 c.37.1.2 137812 2i57A 438 43.95 1h6kZ 98 46.09 d.58.7.1 60686 1a5t 334 46.79 1iugA 352 48.16 c.67.1.3 90699 1ha1 184 51.01 2de3A 365 51.53 3bqoA 211 52.26 2o8nA 265 54.67 2adbA 148 55.58 d.58.7.1 126581 2di3A 239 58.43 2dg7A 195 59.97 1w6kA 732 60.03 a.102.4.2,a.102.4.2 114271,114272 1tiwA 602 60.22 a.176.1.1,c.1.23.2 112430,112431 2qfjA 216 60.66 1rpa 342 60.98 2j6vA 301 61.90 1u7kA 131 62.75 a.73.1.1 113087 2f9dA 125 63.56 d.58.7.1 133159 1peqA 714 63.93 a.98.1.1,c.7.1.2 104131,104132 2ioyA 283 66.06 1ezvA 430 66.17 d.185.1.1,d.185.1.1 59541,59542 2dorA 311 68.78 c.1.4.1 28593 1pb6A 212 68.95 a.4.1.9,a.121.1.1 88017,88018 3ce9A 354 69.01 2pg9A 337 69.77 3b81A 203 72.41 5reqA 727 74.16 c.1.19.1,c.23.6.1 29632,31259 3bcgA 215 75.18 2ifqA 105 75.43 c.47.1.1 137343 2no4A 240 75.72 2icsA 379 76.58 b.92.1.8,c.1.9.14 137241,137242 1knvA 293 80.09 c.52.1.7 68707 1ji0A 240 82.47 c.37.1.12 71665 2hcfA 234 83.61 c.108.1.6 136333 1auiB 169 84.24 a.39.1.5 17325 2ouwA 138 85.05 2g2bA 150 86.30 8abp 306 87.37 1z90A 469 88.67 b.81.1.4,c.68.1.5 124732,124733 1qtwA 285 88.90 c.1.15.1 29392 4crxA 322 89.44 a.60.9.1,d.163.1.1 18095,42155