# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 6.88e-51 a.104.1.1 107238 2fdvA 476 2.15e-50 2hi4A 495 7.48e-50 1po5A 476 2.28e-49 a.104.1.1 94963 2cibA 455 7.03e-49 1zo4A 473 7.46e-49 1r9oA 477 4.00e-48 a.104.1.1 104878 1h5zA 455 6.75e-48 a.104.1.1 90622 2ij2A 470 1.18e-47 a.104.1.1 137449 3c6gA 479 1.56e-47 2iagA 482 6.06e-47 1u13A 455 6.61e-47 a.104.1.1 107578 1x8vA 455 8.83e-47 a.104.1.1 114968 1jpzA 473 1.28e-46 a.104.1.1 67069 2ve3A 444 1.47e-46 1bu7A 455 3.09e-46 a.104.1.1 18937 3b98A 475 4.65e-46 3b6hA 498 9.88e-46 1qmqA 414 9.73e-42 a.104.1.1 18907 1dz4A 414 1.70e-41 a.104.1.1 18903 1yrcA 414 3.18e-41 a.104.1.1 123917 1izoA 417 7.54e-41 a.104.1.1 83851 1n97A 389 7.61e-40 a.104.1.1 80335 1cpt 412 1.59e-39 1jfbA 404 1.30e-38 a.104.1.1 66624 1jipA 403 1.34e-38 a.104.1.1 66748 1z8oA 404 1.81e-38 a.104.1.1 124722 1f24A 402 2.62e-38 a.104.1.1 18953 1q5dA 419 8.59e-38 a.104.1.1 95891 1uedA 406 9.20e-38 a.104.1.1 99256 1eupA 403 1.08e-37 a.104.1.1 18967 2d09A 407 2.01e-37 1lfkA 398 2.29e-37 a.104.1.1 77926 1s1fA 406 2.67e-37 a.104.1.1 112008 1t2bA 397 3.25e-37 2d0eA 407 4.20e-37 1gwiA 411 3.68e-36 a.104.1.1 76364 1odoA 408 3.70e-36 a.104.1.1 92783 1n40A 396 4.22e-36 a.104.1.1 79977 2fr7A 412 1.02e-33 1io7A 368 1.67e-33 a.104.1.1 18971 1cptA 428 4.08e-33 a.104.1.1 18968 3bdzA 397 5.74e-31 2z3tA 425 1.30e-30 3bujA 397 2.00e-30 2zbxA 412 1.41e-29 2uuqA 414 2.63e-29 2rfbA 343 3.65e-28 2e5iA 124 1.544 1u5tA 233 3.767 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 6.797 d.58.7.1 39153 1s0pA 176 8.490 a.192.1.1 98300 2pmvA 399 8.497 1e1oA 504 9.508 b.40.4.1,d.104.1.1 25258,40714 2adcA 229 10.28 d.58.7.1,d.58.7.1 126582,126583 1vicA 262 13.30 c.68.1.13 100756 2incA 491 14.16 a.25.1.2 137524 1l3kA 196 14.78 d.58.7.1,d.58.7.1 73539,73540 1oiaA 95 15.20 d.58.7.1 87051 1whxA 111 15.76 d.58.7.1 114654 2pe8A 105 16.12 2ditA 112 17.00 d.58.7.1 131533 1vplA 256 18.34 c.37.1.12 113966 2dorA 311 23.86 c.1.4.1 28593 2sqcA 631 26.08 a.102.4.2,a.102.4.2 18854,18855 1mp9A 198 27.86 d.129.1.1,d.129.1.1 91385,91386 1lucB 324 29.30 c.1.16.1 29548 2qfjA 216 29.65 1nu4A 97 30.16 d.58.7.1 80731 1umpA 631 30.18 a.102.4.2,a.102.4.2 99619,99620 1j79A 347 30.37 c.1.9.4 62675 1iugA 352 32.48 c.67.1.3 90699 2dg7A 195 33.82 2i57A 438 34.13 1h6kZ 98 34.36 d.58.7.1 60686 1j5sA 463 34.92 c.1.9.8 71580 8abp 306 35.43 2c1lA 358 36.83 1ha1 184 37.84 2f9dA 125 39.66 d.58.7.1 133159 2di3A 239 42.84 3bu3A 306 44.78 2adbA 148 44.80 d.58.7.1 126581 1d3gA 367 45.22 c.1.4.1 28600 1qyiA 384 46.43 c.108.1.13 96595 2ioyA 283 46.82 1juvA 193 47.17 c.71.1.1 90912 1tiwA 602 48.38 a.176.1.1,c.1.23.2 112430,112431 2g7gA 213 48.97 a.4.1.9,a.121.1.1 134732,134733 1w6kA 732 52.51 a.102.4.2,a.102.4.2 114271,114272 2fhfA 1083 53.37 1h7eA 245 53.69 c.68.1.13 60717 2rhmA 193 55.19 3bcgA 215 57.33 2g3bA 208 60.08 a.4.1.9,a.121.1.1 134558,134559 2iyvA 184 60.58 c.37.1.2 137812 3begB 115 60.61 3bgaA 1010 61.16 1u6bA 98 63.15 d.58.7.1 107703 2ifqA 105 65.38 c.47.1.1 137343 1o7fA 469 65.69 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2o8nA 265 65.88 3cerA 343 69.08 2pg9A 337 72.92 1h7wA 1025 75.11 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2dhxA 104 75.88 1rk8A 165 77.49 d.58.7.1 97603 1knvA 293 78.12 c.52.1.7 68707 3b81A 203 78.97 3bqoA 211 79.53 2p36A 335 79.97 2g2bA 150 80.24 1e4iA 447 80.65 c.1.8.4 59225 1fxlA 167 81.33 d.58.7.1,d.58.7.1 39183,39184 1khbA 625 82.26 c.91.1.1,c.109.1.1 68606,68607 2hszA 243 83.27 c.108.1.6 136726 5reqA 727 84.40 c.1.19.1,c.23.6.1 29632,31259 1wmjA 130 84.93 1u7kA 131 85.36 a.73.1.1 113087