# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 7.79e-58 1tqnA 486 8.08e-58 a.104.1.1 107238 2hi4A 495 5.22e-57 1po5A 476 1.62e-56 a.104.1.1 94963 1zo4A 473 2.27e-56 2cibA 455 3.29e-55 2ij2A 470 3.45e-55 a.104.1.1 137449 1r9oA 477 1.07e-54 a.104.1.1 104878 3c6gA 479 1.60e-54 1h5zA 455 2.41e-54 a.104.1.1 90622 2iagA 482 6.38e-54 2ve3A 444 1.88e-53 1x8vA 455 2.29e-53 a.104.1.1 114968 1jpzA 473 2.67e-53 a.104.1.1 67069 1bu7A 455 3.36e-53 a.104.1.1 18937 1u13A 455 3.38e-53 a.104.1.1 107578 3b98A 475 1.62e-52 3b6hA 498 3.44e-52 1qmqA 414 1.46e-47 a.104.1.1 18907 1dz4A 414 1.85e-47 a.104.1.1 18903 1yrcA 414 5.23e-47 a.104.1.1 123917 1izoA 417 9.99e-47 a.104.1.1 83851 1n97A 389 2.21e-46 a.104.1.1 80335 1cpt 412 9.62e-45 1jfbA 404 3.90e-44 a.104.1.1 66624 1f24A 402 1.10e-43 a.104.1.1 18953 1jipA 403 1.39e-43 a.104.1.1 66748 1z8oA 404 1.80e-43 a.104.1.1 124722 1uedA 406 7.01e-43 a.104.1.1 99256 1eupA 403 8.41e-43 a.104.1.1 18967 1lfkA 398 1.16e-42 a.104.1.1 77926 1q5dA 419 1.30e-42 a.104.1.1 95891 2d09A 407 1.39e-42 1s1fA 406 1.58e-42 a.104.1.1 112008 1t2bA 397 1.87e-42 2d0eA 407 2.79e-42 1gwiA 411 1.73e-41 a.104.1.1 76364 1odoA 408 2.58e-41 a.104.1.1 92783 1n40A 396 7.96e-41 a.104.1.1 79977 2fr7A 412 1.99e-38 1io7A 368 1.16e-37 a.104.1.1 18971 1cptA 428 1.23e-37 a.104.1.1 18968 3bdzA 397 5.55e-35 2z3tA 425 8.33e-35 3bujA 397 2.18e-34 2zbxA 412 2.14e-33 2uuqA 414 4.48e-33 2rfbA 343 7.71e-32 1u5tA 233 1.069 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 3.072 d.58.7.1 39153 1mp9A 198 4.060 d.129.1.1,d.129.1.1 91385,91386 1whxA 111 6.047 d.58.7.1 114654 2pmvA 399 6.563 2e5iA 124 7.868 1oiaA 95 11.01 d.58.7.1 87051 1nu4A 97 11.46 d.58.7.1 80731 1l3kA 196 12.63 d.58.7.1,d.58.7.1 73539,73540 1qnaA 200 12.86 d.129.1.1,d.129.1.1 41226,41227 1h6kZ 98 15.75 d.58.7.1 60686 2pe8A 105 16.31 1iugA 352 17.92 c.67.1.3 90699 2adcA 229 18.28 d.58.7.1,d.58.7.1 126582,126583 2aotA 292 20.10 c.66.1.19 127098 2g3bA 208 21.36 a.4.1.9,a.121.1.1 134558,134559 1lucB 324 21.38 c.1.16.1 29548 3bcgA 215 22.77 2q3wA 111 23.00 b.33.1.1 139813 4enl 436 23.41 1a0cA 438 25.00 c.1.15.3 29529 2uxuA 210 25.11 2c1lA 358 29.45 3bbyA 215 30.90 1ha1 184 30.92 1qyiA 384 32.37 c.108.1.13 96595 1auiB 169 32.63 a.39.1.5 17325 2qfjA 216 33.08 2ovkC 159 33.36 2iyvA 184 34.34 c.37.1.2 137812 2o5gA 148 35.40 2f9dA 125 37.12 d.58.7.1 133159 1oo0B 110 38.66 d.58.7.1 87183 1j5sA 463 38.72 c.1.9.8 71580 4crxA 322 39.43 a.60.9.1,d.163.1.1 18095,42155 2ditA 112 39.64 d.58.7.1 131533 3b4uA 294 40.08 1uumA 372 41.22 c.1.4.1 100010 1u7kA 131 41.81 a.73.1.1 113087 1d3gA 367 42.43 c.1.4.1 28600 1rwyA 109 43.55 a.39.1.4 98002 2gv5A 161 43.67 2dorA 311 46.33 c.1.4.1 28593 1e1oA 504 47.97 b.40.4.1,d.104.1.1 25258,40714 1t56A 216 48.01 a.4.1.9,a.121.1.1 106428,106429 1cl1A 395 48.80 c.67.1.3 34395 1w6kA 732 49.76 a.102.4.2,a.102.4.2 114271,114272 1ggzA 148 49.84 a.39.1.5 70176 1vi0A 206 50.33 a.4.1.9,a.121.1.1 100720,100721 1rk8A 165 50.55 d.58.7.1 97603 2incA 491 53.25 a.25.1.2 137524 1wdcC 156 53.57 a.39.1.5 17317 1u6bA 98 54.74 d.58.7.1 107703 1tvkA 440 54.97 c.32.1.1,d.79.2.1 107362,107363 1s0pA 176 55.03 a.192.1.1 98300 1cem 363 55.97 1kk8B 139 56.88 a.39.1.5 77430 1xo0A 324 57.16 a.60.9.1,d.163.1.1 115674,115675 2hoqA 241 57.85 2ibdA 204 58.13 2sqcA 631 58.40 a.102.4.2,a.102.4.2 18854,18855 2g2bA 150 58.94 1y0vH 146 58.96 3ce9A 354 59.65 1tw9A 206 60.46 a.45.1.1,c.47.1.5 107381,107382 1qwgA 251 60.52 c.1.27.1 96473 2ot3A 274 61.55 a.222.1.1 139311 2ifqA 105 63.34 c.47.1.1 137343 1a2xA 159 63.89 a.39.1.5 17251 1vplA 256 64.03 c.37.1.12 113966 1r3sA 367 66.31 c.1.22.1 96963 1i4aA 318 66.35 a.65.1.1 61681 2f07A 197 66.74 2p36A 335 66.74 1jqoA 970 67.24 c.1.12.3 77160 1wdcB 156 68.88 a.39.1.5 17302 1to3A 304 68.98 c.1.10.1 107161 2hcfA 234 70.60 c.108.1.6 136333 1umpA 631 70.79 a.102.4.2,a.102.4.2 99619,99620 2e9lA 469 72.36 1ohlA 342 73.22 c.1.10.3 87035 2obhA 143 73.31 1h7wA 1025 74.52 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1jf2A 195 74.91 a.39.1.5 62930 2guhA 214 75.23 2j23A 121 75.86 2r2iA 198 76.48 1ep3A 311 78.85 c.1.4.1 28597 2dsjA 423 79.07 1yiiA 320 79.30 1mtyD 512 82.40 a.25.1.2 16742 2dg7A 195 83.04 3bs9A 87 83.30 1exrA 148 83.84 a.39.1.5 17299 2qacA 146 84.89 1nsj 205 84.92 3bmaA 407 86.30 1u1jA 765 86.47 c.1.22.2,c.1.22.2 107590,107591 1g97A 459 86.94 b.81.1.4,c.68.1.5 60394,60395 1alvA 173 87.30 a.39.1.8 17370 1uhkA 191 87.38 a.39.1.5 119681 2akzA 439 87.80 c.1.11.1,d.54.1.1 126944,126945 1kwfA 363 89.62 a.102.1.2 73078