# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 6.57e-46 a.104.1.1 107238 2fdvA 476 1.59e-45 2hi4A 495 4.43e-45 1po5A 476 1.07e-44 a.104.1.1 94963 2cibA 455 3.09e-44 1zo4A 473 4.07e-44 1h5zA 455 1.39e-43 a.104.1.1 90622 1r9oA 477 1.82e-43 a.104.1.1 104878 2ij2A 470 2.31e-43 a.104.1.1 137449 1u13A 455 8.37e-43 a.104.1.1 107578 1x8vA 455 8.38e-43 a.104.1.1 114968 3c6gA 479 9.33e-43 2ve3A 444 2.60e-42 2iagA 482 2.61e-42 1jpzA 473 2.86e-42 a.104.1.1 67069 1bu7A 455 4.39e-42 a.104.1.1 18937 3b98A 475 1.75e-41 3b6hA 498 3.98e-41 1qmqA 414 1.20e-37 a.104.1.1 18907 1dz4A 414 3.09e-37 a.104.1.1 18903 1yrcA 414 3.77e-37 a.104.1.1 123917 1izoA 417 6.35e-37 a.104.1.1 83851 1n97A 389 1.70e-36 a.104.1.1 80335 1cpt 412 1.55e-35 1jfbA 404 6.87e-35 a.104.1.1 66624 1jipA 403 8.11e-35 a.104.1.1 66748 1z8oA 404 1.71e-34 a.104.1.1 124722 1f24A 402 1.92e-34 a.104.1.1 18953 1eupA 403 3.91e-34 a.104.1.1 18967 1uedA 406 5.14e-34 a.104.1.1 99256 1q5dA 419 5.58e-34 a.104.1.1 95891 2d09A 407 9.19e-34 2d0eA 407 1.33e-33 1lfkA 398 1.40e-33 a.104.1.1 77926 1t2bA 397 1.62e-33 1s1fA 406 4.59e-33 a.104.1.1 112008 1gwiA 411 6.55e-33 a.104.1.1 76364 1odoA 408 1.02e-32 a.104.1.1 92783 1n40A 396 2.50e-32 a.104.1.1 79977 2fr7A 412 3.64e-30 1io7A 368 9.22e-30 a.104.1.1 18971 1cptA 428 1.44e-29 a.104.1.1 18968 3bdzA 397 6.89e-28 2z3tA 425 1.95e-27 3bujA 397 2.09e-27 2zbxA 412 1.12e-26 2uuqA 414 2.49e-26 2rfbA 343 2.69e-25 1e1oA 504 11.73 b.40.4.1,d.104.1.1 25258,40714 1urnA 97 14.36 d.58.7.1 39153 1oiaA 95 14.60 d.58.7.1 87051 2e5iA 124 18.87 2pmvA 399 23.85 1h7eA 245 24.15 c.68.1.13 60717 1umpA 631 24.69 a.102.4.2,a.102.4.2 99619,99620 1whxA 111 25.34 d.58.7.1 114654 1l3kA 196 26.12 d.58.7.1,d.58.7.1 73539,73540 1ezvA 430 26.87 d.185.1.1,d.185.1.1 59541,59542 1u5tA 233 31.36 a.4.5.54,a.4.5.54 107684,107685 1t5jA 313 34.40 a.209.1.1 99125 1mp9A 198 34.62 d.129.1.1,d.129.1.1 91385,91386 2c1lA 358 37.00 1nu4A 97 39.48 d.58.7.1 80731 2adcA 229 39.71 d.58.7.1,d.58.7.1 126582,126583 1jf2A 195 41.95 a.39.1.5 62930 3b4uA 294 45.16 2guhA 214 47.88 2citA 282 48.38 c.1.8.3 130499 2sqcA 631 48.59 a.102.4.2,a.102.4.2 18854,18855 1vicA 262 48.73 c.68.1.13 100756 2ioyA 283 48.74 1u7kA 131 50.98 a.73.1.1 113087 1j79A 347 51.09 c.1.9.4 62675 1h7wA 1025 51.59 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2g7gA 213 52.83 a.4.1.9,a.121.1.1 134732,134733 8abp 306 53.32 1oyzA 280 55.67 a.118.1.16 93775 1vplA 256 56.31 c.37.1.12 113966 2hf2A 283 57.51 1iugA 352 58.52 c.67.1.3 90699 2pe8A 105 58.73 1ppjB 439 58.92 d.185.1.1,d.185.1.1 104254,104255 1s0pA 176 59.76 a.192.1.1 98300 2di3A 239 59.80 2dorA 311 62.48 c.1.4.1 28593 3bu3A 306 63.73 3bgaA 1010 64.82 2dg7A 195 65.60 3bhqA 211 65.94 1reqA 727 67.05 c.1.19.1,c.23.6.1 29620,31247 2iyvA 184 69.20 c.37.1.2 137812 1ha1 184 69.30 1pb6A 212 69.92 a.4.1.9,a.121.1.1 88017,88018 1qvtA 194 72.46 a.4.1.9,a.121.1.1 104602,104603 1cem 363 74.01 3b81A 203 74.60 2icsA 379 74.65 b.92.1.8,c.1.9.14 137241,137242 2i57A 438 75.73 3bmaA 407 76.78 2rajA 392 77.41 2f9dA 125 78.72 d.58.7.1 133159 2ditA 112 80.26 d.58.7.1 131533 1guzA 310 82.41 c.2.1.5,d.162.1.1 65586,65587 2v3gA 283 84.32 1ukz 203 85.44 3crjA 199 86.29 2de3A 365 86.93 3bqoA 211 87.56 2qfjA 216 87.89 2bv9A 290 89.61 c.1.8.3 129242