# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.55e-47 a.104.1.1 107238 2fdvA 476 6.78e-47 2hi4A 495 2.45e-46 1po5A 476 5.85e-46 a.104.1.1 94963 2cibA 455 2.33e-45 1zo4A 473 3.12e-45 1h5zA 455 7.29e-45 a.104.1.1 90622 1r9oA 477 8.52e-45 a.104.1.1 104878 2ij2A 470 1.57e-44 a.104.1.1 137449 1u13A 455 5.33e-44 a.104.1.1 107578 3c6gA 479 5.48e-44 1x8vA 455 6.64e-44 a.104.1.1 114968 2ve3A 444 9.31e-44 2iagA 482 1.03e-43 1jpzA 473 1.64e-43 a.104.1.1 67069 1bu7A 455 3.06e-43 a.104.1.1 18937 3b98A 475 8.36e-43 3b6hA 498 1.93e-42 1qmqA 414 7.05e-39 a.104.1.1 18907 1dz4A 414 1.67e-38 a.104.1.1 18903 1yrcA 414 2.13e-38 a.104.1.1 123917 1izoA 417 8.78e-38 a.104.1.1 83851 1n97A 389 1.63e-37 a.104.1.1 80335 1cpt 412 1.24e-36 1jfbA 404 5.02e-36 a.104.1.1 66624 1jipA 403 7.35e-36 a.104.1.1 66748 1f24A 402 1.28e-35 a.104.1.1 18953 1z8oA 404 1.74e-35 a.104.1.1 124722 1eupA 403 4.32e-35 a.104.1.1 18967 1uedA 406 4.56e-35 a.104.1.1 99256 1q5dA 419 4.92e-35 a.104.1.1 95891 2d09A 407 5.62e-35 1lfkA 398 8.80e-35 a.104.1.1 77926 2d0eA 407 9.28e-35 1t2bA 397 1.34e-34 1s1fA 406 3.44e-34 a.104.1.1 112008 1gwiA 411 6.29e-34 a.104.1.1 76364 1odoA 408 1.63e-33 a.104.1.1 92783 1n40A 396 2.33e-33 a.104.1.1 79977 2fr7A 412 3.43e-31 1io7A 368 7.86e-31 a.104.1.1 18971 1cptA 428 1.64e-30 a.104.1.1 18968 3bdzA 397 9.37e-29 3bujA 397 3.17e-28 2z3tA 425 3.18e-28 2zbxA 412 1.81e-27 2uuqA 414 3.67e-27 2rfbA 343 3.21e-26 2pmvA 399 16.27 1e1oA 504 18.92 b.40.4.1,d.104.1.1 25258,40714 2e5iA 124 20.71 1ezvA 430 22.43 d.185.1.1,d.185.1.1 59541,59542 1umpA 631 23.24 a.102.4.2,a.102.4.2 99619,99620 1j79A 347 23.74 c.1.9.4 62675 1l3kA 196 26.58 d.58.7.1,d.58.7.1 73539,73540 1oiaA 95 26.65 d.58.7.1 87051 2dorA 311 28.81 c.1.4.1 28593 1u5tA 233 29.00 a.4.5.54,a.4.5.54 107684,107685 1t5jA 313 29.02 a.209.1.1 99125 8abp 306 31.50 1whxA 111 33.68 d.58.7.1 114654 1urnA 97 34.09 d.58.7.1 39153 2ioyA 283 39.86 2c1lA 358 41.15 2guhA 214 42.42 1oyzA 280 42.54 a.118.1.16 93775 3bmaA 407 45.71 2sqcA 631 46.29 a.102.4.2,a.102.4.2 18854,18855 1jf2A 195 46.35 a.39.1.5 62930 3bu3A 306 46.65 1h7eA 245 47.31 c.68.1.13 60717 3b4uA 294 48.49 1auiB 169 49.78 a.39.1.5 17325 3crjA 199 50.49 1mp9A 198 50.63 d.129.1.1,d.129.1.1 91385,91386 2di3A 239 53.98 1vicA 262 54.57 c.68.1.13 100756 2adcA 229 55.64 d.58.7.1,d.58.7.1 126582,126583 1qvtA 194 58.03 a.4.1.9,a.121.1.1 104602,104603 1h7wA 1025 58.51 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1iugA 352 61.23 c.67.1.3 90699 3bgaA 1010 62.48 1ppjB 439 62.64 d.185.1.1,d.185.1.1 104254,104255 2dg7A 195 63.82 3bhqA 211 64.68 2no4A 240 66.72 2rajA 392 69.36 1jubA 311 71.40 c.1.4.1 90908 2g7gA 213 73.06 a.4.1.9,a.121.1.1 134732,134733 2iyvA 184 73.47 c.37.1.2 137812 1pb6A 212 74.38 a.4.1.9,a.121.1.1 88017,88018 2citA 282 74.43 c.1.8.3 130499 1ha1 184 74.69 1ukz 203 75.58 1u7kA 131 75.59 a.73.1.1 113087 2pe8A 105 79.08 3bqoA 211 80.45 3brsA 289 80.53 1s0pA 176 80.75 a.192.1.1 98300 3b81A 203 81.69 2ox1A 196 83.00 1nu4A 97 83.95 d.58.7.1 80731 2qedA 258 84.11 2hf2A 283 84.50 2icsA 379 85.07 b.92.1.8,c.1.9.14 137241,137242 1d3gA 367 88.35 c.1.4.1 28600