# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 1.75e-50 a.104.1.1 107238 2fdvA 476 4.04e-50 2hi4A 495 2.31e-49 1po5A 476 3.64e-49 a.104.1.1 94963 2cibA 455 1.63e-48 1zo4A 473 2.08e-48 1h5zA 455 7.39e-48 a.104.1.1 90622 1r9oA 477 1.03e-47 a.104.1.1 104878 2ij2A 470 1.57e-47 a.104.1.1 137449 3c6gA 479 4.63e-47 1u13A 455 6.04e-47 a.104.1.1 107578 1x8vA 455 6.04e-47 a.104.1.1 114968 2iagA 482 1.21e-46 2ve3A 444 1.34e-46 1jpzA 473 1.94e-46 a.104.1.1 67069 1bu7A 455 3.31e-46 a.104.1.1 18937 3b98A 475 1.25e-45 3b6hA 498 3.03e-45 1qmqA 414 3.92e-41 a.104.1.1 18907 1dz4A 414 8.64e-41 a.104.1.1 18903 1yrcA 414 1.01e-40 a.104.1.1 123917 1izoA 417 2.94e-40 a.104.1.1 83851 1n97A 389 9.85e-40 a.104.1.1 80335 1cpt 412 4.20e-39 1jfbA 404 3.81e-38 a.104.1.1 66624 1jipA 403 6.15e-38 a.104.1.1 66748 1f24A 402 1.03e-37 a.104.1.1 18953 1z8oA 404 1.56e-37 a.104.1.1 124722 1eupA 403 3.37e-37 a.104.1.1 18967 1uedA 406 3.65e-37 a.104.1.1 99256 2d09A 407 4.15e-37 1q5dA 419 5.15e-37 a.104.1.1 95891 2d0eA 407 6.48e-37 1lfkA 398 1.03e-36 a.104.1.1 77926 1t2bA 397 1.32e-36 1s1fA 406 2.27e-36 a.104.1.1 112008 1gwiA 411 7.02e-36 a.104.1.1 76364 1odoA 408 1.60e-35 a.104.1.1 92783 1n40A 396 3.03e-35 a.104.1.1 79977 2fr7A 412 4.62e-33 1io7A 368 2.22e-32 a.104.1.1 18971 1cptA 428 2.39e-32 a.104.1.1 18968 3bdzA 397 2.47e-30 3bujA 397 6.62e-30 2z3tA 425 7.56e-30 2zbxA 412 4.93e-29 2uuqA 414 1.19e-28 2rfbA 343 1.18e-27 1e1oA 504 16.35 b.40.4.1,d.104.1.1 25258,40714 2pmvA 399 17.84 1umpA 631 19.54 a.102.4.2,a.102.4.2 99619,99620 2e5iA 124 20.24 1oiaA 95 24.69 d.58.7.1 87051 1urnA 97 25.66 d.58.7.1 39153 1h7eA 245 27.69 c.68.1.13 60717 2dorA 311 28.22 c.1.4.1 28593 1ezvA 430 31.15 d.185.1.1,d.185.1.1 59541,59542 1h7wA 1025 31.35 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1j79A 347 31.49 c.1.9.4 62675 2rajA 392 33.42 1l3kA 196 33.51 d.58.7.1,d.58.7.1 73539,73540 1whxA 111 34.67 d.58.7.1 114654 8abp 306 35.27 1u5tA 233 36.65 a.4.5.54,a.4.5.54 107684,107685 1oyzA 280 38.06 a.118.1.16 93775 2sqcA 631 38.48 a.102.4.2,a.102.4.2 18854,18855 1t5jA 313 39.63 a.209.1.1 99125 1auiB 169 40.48 a.39.1.5 17325 1iugA 352 40.48 c.67.1.3 90699 3bu3A 306 47.77 3b4uA 294 49.02 2dg7A 195 50.07 1jf2A 195 50.26 a.39.1.5 62930 2guhA 214 51.63 3bgaA 1010 54.13 3bmaA 407 54.25 1vicA 262 56.34 c.68.1.13 100756 1qvtA 194 56.87 a.4.1.9,a.121.1.1 104602,104603 2ioyA 283 57.52 2g7gA 213 57.63 a.4.1.9,a.121.1.1 134732,134733 3bqoA 211 57.83 2c1lA 358 58.76 2di3A 239 59.93 2adcA 229 59.98 d.58.7.1,d.58.7.1 126582,126583 1u7kA 131 60.53 a.73.1.1 113087 3brsA 289 63.11 1pb6A 212 65.13 a.4.1.9,a.121.1.1 88017,88018 2ox1A 196 65.63 3bhqA 211 65.93 2iyvA 184 66.85 c.37.1.2 137812 3b81A 203 71.17 1mp9A 198 74.47 d.129.1.1,d.129.1.1 91385,91386 3crjA 199 77.18 1nu4A 97 78.52 d.58.7.1 80731 2de3A 365 86.13 2hf2A 283 88.91 3bqyA 209 89.87