# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 5.52e-48 1tqnA 486 6.03e-48 a.104.1.1 107238 2hi4A 495 1.99e-47 1po5A 476 1.50e-46 a.104.1.1 94963 1zo4A 473 1.90e-46 1r9oA 477 2.53e-46 a.104.1.1 104878 2cibA 455 1.81e-45 2ij2A 470 2.42e-45 a.104.1.1 137449 1h5zA 455 3.03e-45 a.104.1.1 90622 2ve3A 444 5.29e-45 3c6gA 479 1.28e-44 1bu7A 455 1.30e-44 a.104.1.1 18937 1jpzA 473 1.76e-44 a.104.1.1 67069 1u13A 455 2.40e-44 a.104.1.1 107578 1x8vA 455 4.17e-44 a.104.1.1 114968 3b98A 475 3.19e-43 2iagA 482 3.49e-43 3b6hA 498 3.04e-42 1qmqA 414 9.02e-40 a.104.1.1 18907 1dz4A 414 1.87e-39 a.104.1.1 18903 1yrcA 414 3.11e-39 a.104.1.1 123917 1n97A 389 1.42e-38 a.104.1.1 80335 1izoA 417 5.00e-38 a.104.1.1 83851 1cpt 412 6.75e-38 1jfbA 404 3.96e-37 a.104.1.1 66624 1f24A 402 6.32e-37 a.104.1.1 18953 1q5dA 419 1.75e-36 a.104.1.1 95891 1jipA 403 2.70e-36 a.104.1.1 66748 1z8oA 404 3.20e-36 a.104.1.1 124722 2d09A 407 5.02e-36 1t2bA 397 5.47e-36 1uedA 406 6.18e-36 a.104.1.1 99256 1lfkA 398 6.26e-36 a.104.1.1 77926 2d0eA 407 1.25e-35 1eupA 403 2.15e-35 a.104.1.1 18967 1s1fA 406 6.84e-35 a.104.1.1 112008 1odoA 408 6.86e-35 a.104.1.1 92783 1gwiA 411 7.88e-35 a.104.1.1 76364 1n40A 396 8.30e-35 a.104.1.1 79977 2fr7A 412 3.27e-32 1cptA 428 7.19e-32 a.104.1.1 18968 1io7A 368 3.13e-31 a.104.1.1 18971 3bdzA 397 4.15e-30 3bujA 397 2.13e-29 2zbxA 412 4.06e-29 2z3tA 425 6.03e-29 2uuqA 414 7.65e-28 2rfbA 343 2.96e-27 1u7kA 131 4.963 a.73.1.1 113087 1s0pA 176 6.629 a.192.1.1 98300 2ox1A 196 13.03 2dorA 311 14.66 c.1.4.1 28593 1u5tA 233 17.26 a.4.5.54,a.4.5.54 107684,107685 1e1oA 504 19.27 b.40.4.1,d.104.1.1 25258,40714 1zodA 433 19.62 c.67.1.4 125437 1ytvA 366 21.00 c.94.1.1 124016 2gh9A 386 21.71 1gw5A 621 23.31 a.118.1.10 70629 1jubA 311 24.29 c.1.4.1 90908 2rldA 121 26.27 1gc0A 398 27.33 c.67.1.3 70168 1l3kA 196 27.98 d.58.7.1,d.58.7.1 73539,73540 1vefA 395 28.14 c.67.1.4 120018 2dfzA 381 29.79 1urnA 97 29.94 d.58.7.1 39153 2p3eA 420 30.70 1j5sA 463 31.61 c.1.9.8 71580 2a73B 991 32.80 1fvpA 231 36.06 c.1.16.2 29556 2qahA 303 39.52 1fxjA 331 40.04 b.81.1.4,c.68.1.5 28062,34520 1iugA 352 40.82 c.67.1.3 90699 1j1iA 296 41.54 c.69.1.10 83977 1vplA 256 41.91 c.37.1.12 113966 1h65A 270 42.65 c.37.1.8 65640 1hv9A 456 42.80 b.81.1.4,c.68.1.5 28060,34518 1mp9A 198 43.94 d.129.1.1,d.129.1.1 91385,91386 2ovyA 362 46.51 1oiaA 95 47.97 d.58.7.1 87051 1bd0A 388 50.62 b.49.2.2,c.1.6.1 26480,28642 1ny1A 240 50.99 c.6.2.3 86395 2ot3A 274 51.45 a.222.1.1 139311 1yslA 402 52.13 2fgeA 995 54.96 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1w85A 368 55.53 c.36.1.11 114335 1vfsA 386 57.30 b.49.2.2,c.1.6.1 108584,108585 1t56A 216 59.53 a.4.1.9,a.121.1.1 106428,106429 1h7wA 1025 61.27 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2e5iA 124 61.34 1w63A 618 61.84 i.23.1.1 109192 2kfnA 605 63.65 c.55.3.5,e.8.1.1 33682,42975 1hzfA 367 64.53 a.102.4.4 76731 2qfjA 216 65.01 3c2bA 221 65.04 3bqaA 148 65.76 1s1pA 331 67.29 c.1.7.1 98350 1umpA 631 67.68 a.102.4.2,a.102.4.2 99619,99620 2novA 496 68.56 2c1lA 358 70.10 2ousA 331 72.75 1zk8A 183 72.97 a.4.1.9,a.121.1.1 125177,125178 1khbA 625 73.07 c.91.1.1,c.109.1.1 68606,68607 1h7eA 245 73.83 c.68.1.13 60717 2rhwA 283 74.57 2g7gA 213 76.09 a.4.1.9,a.121.1.1 134732,134733 2iueA 212 76.99 1vp4A 425 77.30 c.67.1.1 113935 2fncA 381 81.42 1wyzA 242 82.24 c.90.1.1 121471 1frb 315 83.01 1txuA 273 83.17 a.222.1.1 107439 1dorA 311 83.64 c.1.4.1 28595 1mi3A 322 86.07 c.1.7.1 91274 1laxA 370 86.75 c.94.1.1 84576