# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.74e-51 a.104.1.1 107238 2fdvA 476 9.40e-51 2hi4A 495 2.83e-50 1po5A 476 4.29e-50 a.104.1.1 94963 1zo4A 473 1.87e-49 2cibA 455 3.83e-49 1r9oA 477 1.26e-48 a.104.1.1 104878 2ij2A 470 2.70e-48 a.104.1.1 137449 3c6gA 479 3.34e-48 1h5zA 455 3.76e-48 a.104.1.1 90622 2iagA 482 7.73e-48 1jpzA 473 1.83e-47 a.104.1.1 67069 2ve3A 444 4.96e-47 1bu7A 455 5.62e-47 a.104.1.1 18937 1u13A 455 5.71e-47 a.104.1.1 107578 1x8vA 455 6.83e-47 a.104.1.1 114968 3b98A 475 1.21e-46 3b6hA 498 2.35e-46 1qmqA 414 5.03e-42 a.104.1.1 18907 1dz4A 414 1.38e-41 a.104.1.1 18903 1yrcA 414 1.57e-41 a.104.1.1 123917 1izoA 417 9.61e-41 a.104.1.1 83851 1n97A 389 2.11e-40 a.104.1.1 80335 1cpt 412 7.61e-40 1jfbA 404 1.03e-38 a.104.1.1 66624 1z8oA 404 1.03e-38 a.104.1.1 124722 1jipA 403 1.37e-38 a.104.1.1 66748 1f24A 402 3.09e-38 a.104.1.1 18953 1q5dA 419 6.52e-38 a.104.1.1 95891 1eupA 403 7.37e-38 a.104.1.1 18967 2d09A 407 1.10e-37 1uedA 406 1.44e-37 a.104.1.1 99256 1t2bA 397 1.72e-37 2d0eA 407 1.85e-37 1lfkA 398 1.94e-37 a.104.1.1 77926 1s1fA 406 3.63e-37 a.104.1.1 112008 1gwiA 411 1.19e-36 a.104.1.1 76364 1odoA 408 1.96e-36 a.104.1.1 92783 1n40A 396 3.20e-36 a.104.1.1 79977 2fr7A 412 1.60e-33 1io7A 368 1.99e-33 a.104.1.1 18971 1cptA 428 8.17e-33 a.104.1.1 18968 3bdzA 397 4.95e-31 2z3tA 425 9.34e-31 3bujA 397 2.46e-30 2zbxA 412 9.93e-30 2uuqA 414 4.26e-29 2rfbA 343 6.25e-28 1e1oA 504 9.389 b.40.4.1,d.104.1.1 25258,40714 1l3kA 196 11.45 d.58.7.1,d.58.7.1 73539,73540 1urnA 97 13.72 d.58.7.1 39153 1s0pA 176 13.90 a.192.1.1 98300 2e5iA 124 15.41 1mp9A 198 17.47 d.129.1.1,d.129.1.1 91385,91386 1u5tA 233 19.54 a.4.5.54,a.4.5.54 107684,107685 2i57A 438 23.97 1lucB 324 24.83 c.1.16.1 29548 2p36A 335 27.91 2g7gA 213 28.88 a.4.1.9,a.121.1.1 134732,134733 1j5sA 463 29.65 c.1.9.8 71580 2uxuA 210 30.07 2pe8A 105 30.86 2p3eA 420 31.54 2g3bA 208 32.56 a.4.1.9,a.121.1.1 134558,134559 2iyvA 184 33.23 c.37.1.2 137812 1oiaA 95 33.35 d.58.7.1 87051 1h7wA 1025 33.78 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1nu4A 97 34.59 d.58.7.1 80731 1ha1 184 37.10 2c1lA 358 37.50 1a5t 334 39.16 2bfgA 503 41.02 b.71.1.2,c.1.8.3 128423,128424 2dg7A 195 44.48 1to3A 304 44.59 c.1.10.1 107161 2sqcA 631 44.74 a.102.4.2,a.102.4.2 18854,18855 1h7eA 245 44.86 c.68.1.13 60717 2dqwA 294 45.22 1vicA 262 45.31 c.68.1.13 100756 2ioyA 283 46.66 3b4uA 294 48.46 1g67A 225 50.88 c.1.3.1 60311 3bcgA 215 52.02 1d3gA 367 52.31 c.1.4.1 28600 2no4A 240 55.41 2q3wA 111 56.76 b.33.1.1 139813 1sxjA 511 57.34 a.80.1.1,c.37.1.20 106081,106082 2hcfA 234 57.88 c.108.1.6 136333 2incA 491 58.17 a.25.1.2 137524 2di3A 239 59.91 2adcA 229 62.16 d.58.7.1,d.58.7.1 126582,126583 1qwgA 251 62.93 c.1.27.1 96473 2qfjA 216 63.29 2f9dA 125 65.35 d.58.7.1 133159 1qtwA 285 67.22 c.1.15.1 29392 1jilA 420 67.25 c.26.1.1 66745 2a84A 300 67.57 c.26.1.4 126389 3bgaA 1010 68.64 2a73B 991 69.09 1b0nA 111 69.30 a.34.1.1,a.35.1.3 17001,17064 1t5jA 313 70.19 a.209.1.1 99125 2iekA 200 72.99 1vi0A 206 75.31 a.4.1.9,a.121.1.1 100720,100721 3bmaA 407 77.12 1pb6A 212 79.48 a.4.1.9,a.121.1.1 88017,88018 2bv9A 290 79.88 c.1.8.3 129242 3bu3A 306 80.12 1g60A 260 80.67 c.66.1.11 70151 2hoqA 241 81.38 2b7kA 200 82.12 c.47.1.10 128042 2o8nA 265 82.50 1uumA 372 82.98 c.1.4.1 100010 2pg9A 337 83.92 2tct 207 85.71 1h6kZ 98 87.28 d.58.7.1 60686 1v0wA 506 88.65 d.136.1.2,d.136.1.2 108220,108221 2ditA 112 88.88 d.58.7.1 131533 1jqoA 970 89.28 c.1.12.3 77160 1rpa 342 89.42