# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 1.44e-53 a.104.1.1 107238 2fdvA 476 2.45e-53 2hi4A 495 3.52e-53 1po5A 476 1.71e-52 a.104.1.1 94963 1zo4A 473 2.41e-52 1r9oA 477 1.46e-51 a.104.1.1 104878 2cibA 455 2.57e-51 1h5zA 455 1.91e-50 a.104.1.1 90622 2ij2A 470 2.32e-50 a.104.1.1 137449 3c6gA 479 2.67e-50 1bu7A 455 3.04e-50 a.104.1.1 18937 1jpzA 473 3.37e-50 a.104.1.1 67069 1x8vA 455 1.29e-49 a.104.1.1 114968 1u13A 455 1.39e-49 a.104.1.1 107578 2iagA 482 1.47e-49 2ve3A 444 3.89e-49 3b98A 475 1.56e-48 3b6hA 498 4.20e-48 1qmqA 414 5.30e-44 a.104.1.1 18907 1yrcA 414 1.95e-43 a.104.1.1 123917 1dz4A 414 5.87e-43 a.104.1.1 18903 1izoA 417 2.26e-42 a.104.1.1 83851 1n97A 389 6.34e-42 a.104.1.1 80335 1cpt 412 3.53e-41 1jipA 403 2.43e-40 a.104.1.1 66748 1jfbA 404 6.00e-40 a.104.1.1 66624 1z8oA 404 6.42e-40 a.104.1.1 124722 2d0eA 407 9.07e-40 2d09A 407 1.49e-39 1f24A 402 1.64e-39 a.104.1.1 18953 1uedA 406 2.20e-39 a.104.1.1 99256 1q5dA 419 2.47e-39 a.104.1.1 95891 1s1fA 406 4.94e-39 a.104.1.1 112008 1eupA 403 4.97e-39 a.104.1.1 18967 1lfkA 398 7.06e-39 a.104.1.1 77926 1t2bA 397 7.96e-39 1gwiA 411 7.27e-38 a.104.1.1 76364 1odoA 408 1.38e-37 a.104.1.1 92783 1n40A 396 2.38e-37 a.104.1.1 79977 2fr7A 412 9.82e-36 1io7A 368 1.53e-34 a.104.1.1 18971 1cptA 428 8.36e-34 a.104.1.1 18968 3bdzA 397 1.90e-32 3bujA 397 9.65e-32 2z3tA 425 2.43e-31 2uuqA 414 3.36e-31 2zbxA 412 1.19e-30 2rfbA 343 5.43e-29 3bu3A 306 1.286 1j79A 347 1.972 c.1.9.4 62675 2incA 491 2.056 a.25.1.2 137524 1e1oA 504 3.024 b.40.4.1,d.104.1.1 25258,40714 1cs0A 1073 3.961 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 3bmaA 407 7.128 1ohvA 472 8.971 c.67.1.4 93031 1h3gA 601 10.84 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1qmgA 524 11.45 a.100.1.2,c.2.1.6 18785,30182 1hr6B 443 11.54 d.185.1.1,d.185.1.1 61166,61167 1kqfA 1015 14.12 b.52.2.2,c.81.1.1 72871,72872 1gnd 447 14.41 1zu0A 529 14.94 2a84A 300 15.89 c.26.1.4 126389 1lucB 324 16.30 c.1.16.1 29548 3bsoA 510 17.45 1qyiA 384 18.50 c.108.1.13 96595 1satA 471 19.72 b.80.7.1,d.92.1.6 28014,40300 2p36A 335 19.95 2cf5A 357 22.27 2i57A 438 24.45 1lqaA 346 24.53 c.1.7.1 84674 1umpA 631 25.22 a.102.4.2,a.102.4.2 99619,99620 8abp 306 25.86 2bv9A 290 26.66 c.1.8.3 129242 1s0pA 176 26.99 a.192.1.1 98300 2j6vA 301 27.96 1l3kA 196 29.29 d.58.7.1,d.58.7.1 73539,73540 2c0cA 362 30.89 2e5iA 124 32.50 2hhvA 580 32.75 c.55.3.5,e.8.1.1 136514,136515 1mp9A 198 32.95 d.129.1.1,d.129.1.1 91385,91386 2pnkA 428 34.10 1rpa 342 34.72 2a74A 643 34.81 2c1lA 358 35.31 2ff4A 388 37.33 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 1g71A 347 39.15 d.264.1.1 43268 2sqcA 631 39.16 a.102.4.2,a.102.4.2 18854,18855 2hcfA 234 39.70 c.108.1.6 136333 1w6kA 732 40.01 a.102.4.2,a.102.4.2 114271,114272 1vicA 262 40.91 c.68.1.13 100756 2bryA 497 41.25 2g3bA 208 41.76 a.4.1.9,a.121.1.1 134558,134559 2citA 282 42.24 c.1.8.3 130499 1yw1A 442 42.56 c.1.16.4 124130 1l3sA 580 43.82 c.55.3.5,e.8.1.1 84521,84522 2v3gA 283 44.07 2nx9A 464 46.51 1urnA 97 46.94 d.58.7.1 39153 1ir3A 306 47.74 d.144.1.7 41702 2z26A 347 48.03 2c5uA 375 50.09 2b7kA 200 50.27 c.47.1.10 128042 1ur4A 399 50.67 c.1.8.3 113402 2ioyA 283 52.80 2iyvA 184 54.80 c.37.1.2 137812 1cjxA 357 55.35 d.32.1.3,d.32.1.3 38516,38517 2ikqA 270 55.93 1gl6A 436 56.10 c.37.1.11 70259 1g67A 225 56.16 c.1.3.1 60311 2dg7A 195 56.29 1qnaA 200 56.35 d.129.1.1,d.129.1.1 41226,41227 1b65A 375 57.96 d.154.1.1 42020 1nw1A 429 57.97 d.144.1.8 86286 2go3A 267 58.96 d.14.1.7,d.14.1.7 135422,135423 1hv9A 456 58.99 b.81.1.4,c.68.1.5 28060,34518 2v7pA 310 60.23 2hoqA 241 60.58 1g97A 459 61.02 b.81.1.4,c.68.1.5 60394,60395 2v26A 784 61.38 1tjyA 316 62.84 c.93.1.1 107062 2qr4A 587 64.12 3ce9A 354 64.90 2eg6A 347 65.23 1uokA 558 65.28 b.71.1.1,c.1.8.1 27801,28788 1ha1 184 65.95 1yoeA 322 66.25 1a9xA 1058 66.45 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2i5iA 263 66.64 1dliA 402 67.17 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2guyA 478 67.21 b.71.1.1,c.1.8.1 135754,135755 1twfA 1733 67.73 e.29.1.2 112725 1dv2A 452 67.79 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1mp4A 292 68.13 c.68.1.6 79376 2no4A 240 69.59 1qwgA 251 70.28 c.1.27.1 96473 2g7gA 213 70.35 a.4.1.9,a.121.1.1 134732,134733 1b0aA 288 71.64 c.2.1.7,c.58.1.2 30286,33934 2oy0A 262 71.96 1h7eA 245 72.90 c.68.1.13 60717 1np7A 489 73.21 a.99.1.1,c.28.1.1 80677,80678 1a5t 334 74.41 1ffyA 917 75.07 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 7taa 478 75.62 1kwfA 363 75.98 a.102.1.2 73078 2gkmA 136 76.48 1j7nA 776 77.17 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2bkhA 814 77.49 2bfgA 503 79.32 b.71.1.2,c.1.8.3 128423,128424 1ia6A 441 79.75 a.102.1.2 76738 1oiaA 95 81.56 d.58.7.1 87051 1v2xA 194 81.80 c.116.1.1 100274 2ot3A 274 83.60 a.222.1.1 139311 1jilA 420 83.79 c.26.1.1 66745 2p3eA 420 84.14 2dqwA 294 85.49 2hs3A 603 87.18 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2uxuA 210 88.13 3bwwA 307 88.90 1nhsA 447 89.35 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199