# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 4.92e-55 a.104.1.1 107238 2fdvA 476 1.28e-54 2hi4A 495 7.38e-54 1po5A 476 9.47e-54 a.104.1.1 94963 1zo4A 473 4.26e-53 2cibA 455 1.20e-52 1r9oA 477 3.46e-52 a.104.1.1 104878 2ij2A 470 9.64e-52 a.104.1.1 137449 3c6gA 479 1.25e-51 1h5zA 455 1.78e-51 a.104.1.1 90622 2iagA 482 5.43e-51 1jpzA 473 8.96e-51 a.104.1.1 67069 2ve3A 444 2.32e-50 1u13A 455 2.74e-50 a.104.1.1 107578 1bu7A 455 3.08e-50 a.104.1.1 18937 1x8vA 455 3.37e-50 a.104.1.1 114968 3b98A 475 8.57e-50 3b6hA 498 2.33e-49 1qmqA 414 4.85e-45 a.104.1.1 18907 1dz4A 414 1.51e-44 a.104.1.1 18903 1yrcA 414 1.54e-44 a.104.1.1 123917 1izoA 417 1.07e-43 a.104.1.1 83851 1n97A 389 3.38e-43 a.104.1.1 80335 1cpt 412 1.72e-42 1z8oA 404 2.26e-41 a.104.1.1 124722 1jipA 403 2.57e-41 a.104.1.1 66748 1jfbA 404 3.52e-41 a.104.1.1 66624 1f24A 402 9.37e-41 a.104.1.1 18953 1q5dA 419 1.12e-40 a.104.1.1 95891 1eupA 403 1.66e-40 a.104.1.1 18967 2d09A 407 2.03e-40 1uedA 406 2.92e-40 a.104.1.1 99256 1lfkA 398 3.96e-40 a.104.1.1 77926 1t2bA 397 4.08e-40 2d0eA 407 4.56e-40 1s1fA 406 7.37e-40 a.104.1.1 112008 1gwiA 411 3.56e-39 a.104.1.1 76364 1odoA 408 6.19e-39 a.104.1.1 92783 1n40A 396 1.23e-38 a.104.1.1 79977 2fr7A 412 6.67e-36 1io7A 368 9.80e-36 a.104.1.1 18971 1cptA 428 5.19e-35 a.104.1.1 18968 3bdzA 397 3.20e-33 2z3tA 425 6.49e-33 3bujA 397 1.68e-32 2zbxA 412 1.82e-31 2uuqA 414 4.79e-31 2rfbA 343 6.89e-30 1e1oA 504 13.26 b.40.4.1,d.104.1.1 25258,40714 1mp9A 198 13.99 d.129.1.1,d.129.1.1 91385,91386 2e5iA 124 14.62 1l3kA 196 16.49 d.58.7.1,d.58.7.1 73539,73540 1u5tA 233 16.96 a.4.5.54,a.4.5.54 107684,107685 1lucB 324 17.72 c.1.16.1 29548 1s0pA 176 19.90 a.192.1.1 98300 1urnA 97 20.98 d.58.7.1 39153 2ioyA 283 21.48 1vicA 262 23.76 c.68.1.13 100756 2o8nA 265 24.47 1g67A 225 27.71 c.1.3.1 60311 2c1lA 358 29.32 3b4uA 294 30.34 2g3bA 208 34.61 a.4.1.9,a.121.1.1 134558,134559 2i57A 438 35.50 2p36A 335 36.06 2p3eA 420 36.39 2sqcA 631 36.99 a.102.4.2,a.102.4.2 18854,18855 2ox1A 196 37.31 2iyvA 184 42.70 c.37.1.2 137812 2g7gA 213 44.63 a.4.1.9,a.121.1.1 134732,134733 2dg7A 195 45.16 2bfgA 503 45.71 b.71.1.2,c.1.8.3 128423,128424 3bu3A 306 45.73 1j5sA 463 47.55 c.1.9.8 71580 2pmvA 399 47.97 2pe8A 105 48.03 1ha1 184 48.38 1qwgA 251 48.38 c.1.27.1 96473 1qyiA 384 49.56 c.108.1.13 96595 2dqwA 294 49.84 3cnyA 301 50.31 1oiaA 95 52.13 d.58.7.1 87051 1h7wA 1025 52.53 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1to3A 304 52.99 c.1.10.1 107161 1nu4A 97 53.67 d.58.7.1 80731 2adcA 229 53.95 d.58.7.1,d.58.7.1 126582,126583 2hcfA 234 54.02 c.108.1.6 136333 2dorA 311 54.05 c.1.4.1 28593 3bcgA 215 54.42 8abp 306 54.51 3brsA 289 56.71 2uxuA 210 58.26 2di3A 239 58.83 1vplA 256 61.81 c.37.1.12 113966 2f9dA 125 63.70 d.58.7.1 133159 1qtwA 285 64.67 c.1.15.1 29392 3bgaA 1010 64.89 1d3gA 367 66.48 c.1.4.1 28600 1h7eA 245 66.83 c.68.1.13 60717 1j79A 347 68.96 c.1.9.4 62675 1pb6A 212 69.86 a.4.1.9,a.121.1.1 88017,88018 1u9jA 358 71.14 c.2.1.2 113243 1qnaA 200 72.75 d.129.1.1,d.129.1.1 41226,41227 3bwwA 307 73.57 2qfjA 216 74.62 2ifqA 105 74.70 c.47.1.1 137343 1rpa 342 75.53 1t5jA 313 77.53 a.209.1.1 99125 2pg9A 337 79.39 2fhfA 1083 79.46 1umpA 631 80.30 a.102.4.2,a.102.4.2 99619,99620 2oy0A 262 81.48 1h6kZ 98 84.06 d.58.7.1 60686 2no4A 240 85.51 2iekA 200 87.21 1b0nA 111 89.19 a.34.1.1,a.35.1.3 17001,17064 2citA 282 89.60 c.1.8.3 130499