# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 6.43e-56 a.104.1.1 107238 2fdvA 476 4.16e-55 2hi4A 495 7.57e-55 1po5A 476 3.45e-54 a.104.1.1 94963 2cibA 455 1.42e-53 1zo4A 473 2.01e-53 1r9oA 477 6.92e-53 a.104.1.1 104878 1h5zA 455 1.37e-52 a.104.1.1 90622 2ij2A 470 5.26e-52 a.104.1.1 137449 3c6gA 479 5.52e-52 2iagA 482 8.22e-52 1u13A 455 1.46e-51 a.104.1.1 107578 2ve3A 444 1.54e-51 1x8vA 455 2.77e-51 a.104.1.1 114968 1jpzA 473 3.79e-51 a.104.1.1 67069 3b98A 475 6.69e-51 1bu7A 455 1.37e-50 a.104.1.1 18937 3b6hA 498 2.30e-50 1qmqA 414 1.38e-45 a.104.1.1 18907 1dz4A 414 2.53e-45 a.104.1.1 18903 1yrcA 414 2.56e-45 a.104.1.1 123917 1izoA 417 1.16e-44 a.104.1.1 83851 1n97A 389 5.53e-44 a.104.1.1 80335 1cpt 412 1.71e-43 1jfbA 404 5.41e-42 a.104.1.1 66624 1jipA 403 5.85e-42 a.104.1.1 66748 1z8oA 404 7.19e-42 a.104.1.1 124722 1f24A 402 1.10e-41 a.104.1.1 18953 1q5dA 419 2.11e-41 a.104.1.1 95891 2d09A 407 4.90e-41 1uedA 406 5.12e-41 a.104.1.1 99256 1eupA 403 6.38e-41 a.104.1.1 18967 1lfkA 398 6.83e-41 a.104.1.1 77926 1s1fA 406 1.17e-40 a.104.1.1 112008 2d0eA 407 1.18e-40 1t2bA 397 2.27e-40 1gwiA 411 3.21e-39 a.104.1.1 76364 1odoA 408 4.17e-39 a.104.1.1 92783 1n40A 396 8.05e-39 a.104.1.1 79977 2fr7A 412 8.70e-37 1io7A 368 5.01e-36 a.104.1.1 18971 1cptA 428 5.32e-36 a.104.1.1 18968 3bdzA 397 3.22e-33 2z3tA 425 7.67e-33 3bujA 397 1.19e-32 2zbxA 412 1.30e-31 2uuqA 414 1.55e-31 2rfbA 343 2.33e-30 1j79A 347 3.028 c.1.9.4 62675 2e5iA 124 6.318 1u5tA 233 10.48 a.4.5.54,a.4.5.54 107684,107685 1e1oA 504 11.14 b.40.4.1,d.104.1.1 25258,40714 1urnA 97 15.80 d.58.7.1 39153 2pmvA 399 21.32 1vicA 262 22.64 c.68.1.13 100756 1qyiA 384 24.95 c.108.1.13 96595 1s0pA 176 25.76 a.192.1.1 98300 2incA 491 28.01 a.25.1.2 137524 1iugA 352 28.42 c.67.1.3 90699 1mp9A 198 30.94 d.129.1.1,d.129.1.1 91385,91386 2sqcA 631 31.66 a.102.4.2,a.102.4.2 18854,18855 1wmjA 130 32.15 1oiaA 95 32.86 d.58.7.1 87051 2qzvA 873 33.17 2ow6A 1045 36.46 2no4A 240 36.48 1l3kA 196 36.93 d.58.7.1,d.58.7.1 73539,73540 2z26A 347 38.79 2c1lA 358 43.57 3bu3A 306 44.44 2pe8A 105 46.64 1umpA 631 49.13 a.102.4.2,a.102.4.2 99619,99620 2bfgA 503 49.41 b.71.1.2,c.1.8.3 128423,128424 8abp 306 49.48 1h7eA 245 51.64 c.68.1.13 60717 1h7wA 1025 53.08 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 3brsA 289 54.03 1whxA 111 55.86 d.58.7.1 114654 2ax3A 502 56.65 c.72.1.4,c.104.1.1 127477,127478 2p36A 335 56.81 1lqtA 456 57.00 c.3.1.1,c.4.1.1 74198,74199 1nu4A 97 57.24 d.58.7.1 80731 1g67A 225 57.97 c.1.3.1 60311 1auiB 169 58.83 a.39.1.5 17325 2citA 282 58.98 c.1.8.3 130499 2adcA 229 59.86 d.58.7.1,d.58.7.1 126582,126583 1ezvA 430 60.36 d.185.1.1,d.185.1.1 59541,59542 2de3A 365 60.43 2ditA 112 61.37 d.58.7.1 131533 2ioyA 283 64.18 2eg6A 347 65.61 2hcfA 234 66.30 c.108.1.6 136333 2iyvA 184 68.02 c.37.1.2 137812 1w6kA 732 70.35 a.102.4.2,a.102.4.2 114271,114272 2o8nA 265 70.44 1u9jA 358 71.03 c.2.1.2 113243 2hoqA 241 72.29 3bcgA 215 72.78 1sfp 114 73.83 3bqoA 211 73.95 1juvA 193 74.76 c.71.1.1 90912 1cjxA 357 75.30 d.32.1.3,d.32.1.3 38516,38517 1vplA 256 75.99 c.37.1.12 113966 2ifqA 105 77.52 c.47.1.1 137343 1b0nA 111 78.51 a.34.1.1,a.35.1.3 17001,17064 2g7gA 213 80.78 a.4.1.9,a.121.1.1 134732,134733 1bfd 528 81.47 3bgaA 1010 82.33 2dorA 311 83.36 c.1.4.1 28593 2hf2A 283 83.44 1mi3A 322 85.50 c.1.7.1 91274 3b4uA 294 86.38