# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.85e-54 a.104.1.1 107238 2fdvA 476 1.71e-53 2hi4A 495 2.59e-53 1po5A 476 8.56e-53 a.104.1.1 94963 1zo4A 473 6.01e-52 2cibA 455 7.18e-52 1r9oA 477 2.95e-51 a.104.1.1 104878 1h5zA 455 5.15e-51 a.104.1.1 90622 2ij2A 470 9.09e-51 a.104.1.1 137449 3c6gA 479 1.25e-50 2iagA 482 3.74e-50 1u13A 455 4.64e-50 a.104.1.1 107578 2ve3A 444 5.90e-50 1x8vA 455 6.88e-50 a.104.1.1 114968 1jpzA 473 1.19e-49 a.104.1.1 67069 1bu7A 455 3.17e-49 a.104.1.1 18937 3b98A 475 3.40e-49 3b6hA 498 1.28e-48 1qmqA 414 2.77e-44 a.104.1.1 18907 1dz4A 414 4.64e-44 a.104.1.1 18903 1yrcA 414 1.02e-43 a.104.1.1 123917 1izoA 417 2.42e-43 a.104.1.1 83851 1n97A 389 4.90e-43 a.104.1.1 80335 1cpt 412 5.08e-42 1jfbA 404 5.26e-41 a.104.1.1 66624 1jipA 403 1.12e-40 a.104.1.1 66748 1z8oA 404 1.40e-40 a.104.1.1 124722 1f24A 402 1.53e-40 a.104.1.1 18953 1q5dA 419 3.35e-40 a.104.1.1 95891 1uedA 406 6.55e-40 a.104.1.1 99256 2d09A 407 8.71e-40 1eupA 403 9.58e-40 a.104.1.1 18967 1lfkA 398 1.32e-39 a.104.1.1 77926 2d0eA 407 1.65e-39 1s1fA 406 2.40e-39 a.104.1.1 112008 1t2bA 397 4.14e-39 1gwiA 411 1.79e-38 a.104.1.1 76364 1odoA 408 2.59e-38 a.104.1.1 92783 1n40A 396 4.86e-38 a.104.1.1 79977 2fr7A 412 1.19e-35 1io7A 368 3.11e-35 a.104.1.1 18971 1cptA 428 4.53e-35 a.104.1.1 18968 3bdzA 397 2.76e-32 2z3tA 425 4.12e-32 3bujA 397 8.86e-32 2uuqA 414 7.22e-31 2zbxA 412 8.35e-31 2rfbA 343 1.03e-29 2pmvA 399 8.592 1u5tA 233 10.19 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 11.32 d.58.7.1 39153 1e1oA 504 12.02 b.40.4.1,d.104.1.1 25258,40714 1iugA 352 14.11 c.67.1.3 90699 1s0pA 176 16.80 a.192.1.1 98300 1d3gA 367 17.81 c.1.4.1 28600 1l3kA 196 20.05 d.58.7.1,d.58.7.1 73539,73540 2e5iA 124 20.66 1oiaA 95 20.94 d.58.7.1 87051 1qyiA 384 21.16 c.108.1.13 96595 1j79A 347 25.18 c.1.9.4 62675 1vicA 262 27.16 c.68.1.13 100756 1mp9A 198 27.53 d.129.1.1,d.129.1.1 91385,91386 2i57A 438 28.64 2je8A 848 30.48 1vplA 256 35.41 c.37.1.12 113966 8abp 306 35.71 2dorA 311 36.37 c.1.4.1 28593 1wmjA 130 36.66 2sqcA 631 38.28 a.102.4.2,a.102.4.2 18854,18855 3bqoA 211 39.89 2ow6A 1045 41.11 2no4A 240 41.32 1h7wA 1025 44.67 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2hoqA 241 45.02 2incA 491 45.12 a.25.1.2 137524 3b4uA 294 45.96 2iyvA 184 46.50 c.37.1.2 137812 1lucB 324 47.91 c.1.16.1 29548 1a0cA 438 49.49 c.1.15.3 29529 1nu4A 97 50.15 d.58.7.1 80731 1h7eA 245 50.91 c.68.1.13 60717 1g67A 225 51.14 c.1.3.1 60311 2b7kA 200 52.78 c.47.1.10 128042 1umpA 631 53.08 a.102.4.2,a.102.4.2 99619,99620 1whxA 111 54.55 d.58.7.1 114654 2uxuA 210 54.93 2ditA 112 55.23 d.58.7.1 131533 1auiB 169 57.42 a.39.1.5 17325 3brsA 289 58.15 1pb6A 212 59.67 a.4.1.9,a.121.1.1 88017,88018 1tvkA 440 60.31 c.32.1.1,d.79.2.1 107362,107363 1w6kA 732 61.29 a.102.4.2,a.102.4.2 114271,114272 2c1lA 358 62.59 2pe8A 105 64.00 1mtyD 512 64.87 a.25.1.2 16742 1g97A 459 66.34 b.81.1.4,c.68.1.5 60394,60395 2o8nA 265 66.76 2hcfA 234 66.91 c.108.1.6 136333 3bcgA 215 68.33 2guhA 214 69.34 3cssA 267 73.21 2dg7A 195 75.67 2hszA 243 76.69 c.108.1.6 136726 2a73B 991 78.94 1ha1 184 79.26 2ox1A 196 79.63 2ioyA 283 79.89 3bgaA 1010 81.78 3bhqA 211 83.07 1cem 363 83.36 1gjwA 637 84.68 b.71.1.1,c.1.8.1 60582,60583 2f9dA 125 87.98 d.58.7.1 133159