# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 6.38e-56 a.104.1.1 107238 2fdvA 476 3.36e-55 2hi4A 495 1.56e-54 1po5A 476 3.59e-54 a.104.1.1 94963 1zo4A 473 2.11e-53 2cibA 455 2.15e-53 1r9oA 477 8.86e-53 a.104.1.1 104878 1h5zA 455 2.03e-52 a.104.1.1 90622 2ij2A 470 3.24e-52 a.104.1.1 137449 3c6gA 479 4.03e-52 2iagA 482 1.96e-51 1u13A 455 2.16e-51 a.104.1.1 107578 2ve3A 444 3.01e-51 1x8vA 455 3.06e-51 a.104.1.1 114968 1jpzA 473 4.07e-51 a.104.1.1 67069 3b98A 475 1.29e-50 1bu7A 455 1.47e-50 a.104.1.1 18937 3b6hA 498 5.52e-50 1qmqA 414 1.07e-45 a.104.1.1 18907 1dz4A 414 2.27e-45 a.104.1.1 18903 1yrcA 414 4.09e-45 a.104.1.1 123917 1izoA 417 1.10e-44 a.104.1.1 83851 1n97A 389 2.24e-44 a.104.1.1 80335 1cpt 412 2.23e-43 1jfbA 404 3.50e-42 a.104.1.1 66624 1jipA 403 8.09e-42 a.104.1.1 66748 1z8oA 404 9.51e-42 a.104.1.1 124722 1f24A 402 9.76e-42 a.104.1.1 18953 1q5dA 419 2.39e-41 a.104.1.1 95891 1uedA 406 4.31e-41 a.104.1.1 99256 1lfkA 398 4.66e-41 a.104.1.1 77926 1eupA 403 5.25e-41 a.104.1.1 18967 2d09A 407 6.72e-41 1t2bA 397 1.33e-40 2d0eA 407 1.60e-40 1s1fA 406 1.75e-40 a.104.1.1 112008 1gwiA 411 1.71e-39 a.104.1.1 76364 1odoA 408 1.87e-39 a.104.1.1 92783 1n40A 396 5.44e-39 a.104.1.1 79977 2fr7A 412 1.35e-36 1io7A 368 2.11e-36 a.104.1.1 18971 1cptA 428 5.74e-36 a.104.1.1 18968 3bdzA 397 1.59e-33 3bujA 397 3.79e-33 2z3tA 425 4.82e-33 2zbxA 412 1.16e-31 2uuqA 414 1.67e-31 2rfbA 343 1.77e-30 2e5iA 124 5.544 1u5tA 233 6.087 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 7.092 d.58.7.1 39153 1e1oA 504 8.266 b.40.4.1,d.104.1.1 25258,40714 2pmvA 399 9.691 1s0pA 176 12.50 a.192.1.1 98300 1mp9A 198 12.92 d.129.1.1,d.129.1.1 91385,91386 1l3kA 196 13.67 d.58.7.1,d.58.7.1 73539,73540 1oiaA 95 14.97 d.58.7.1 87051 1whxA 111 17.20 d.58.7.1 114654 2ditA 112 19.52 d.58.7.1 131533 2adcA 229 20.78 d.58.7.1,d.58.7.1 126582,126583 1nu4A 97 22.81 d.58.7.1 80731 1qyiA 384 24.31 c.108.1.13 96595 3b4uA 294 26.08 2sqcA 631 26.88 a.102.4.2,a.102.4.2 18854,18855 2pe8A 105 29.00 1iugA 352 29.05 c.67.1.3 90699 2iyvA 184 32.94 c.37.1.2 137812 8abp 306 34.61 2p36A 335 36.48 1vplA 256 39.03 c.37.1.12 113966 1j79A 347 39.30 c.1.9.4 62675 2incA 491 42.94 a.25.1.2 137524 2i57A 438 43.27 1j5sA 463 43.65 c.1.9.8 71580 1umpA 631 43.86 a.102.4.2,a.102.4.2 99619,99620 1u7kA 131 46.46 a.73.1.1 113087 1wmjA 130 47.07 1ha1 184 47.67 2g3bA 208 50.60 a.4.1.9,a.121.1.1 134558,134559 2ifqA 105 51.46 c.47.1.1 137343 3bcgA 215 51.91 3brsA 289 52.18 2no4A 240 53.02 2uxuA 210 53.50 2c1lA 358 53.56 1h7wA 1025 53.84 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1h7eA 245 57.99 c.68.1.13 60717 1u1jA 765 58.25 c.1.22.2,c.1.22.2 107590,107591 2q3wA 111 58.94 b.33.1.1 139813 1h6kZ 98 61.49 d.58.7.1 60686 3cerA 343 62.09 1u6bA 98 62.62 d.58.7.1 107703 2o8nA 265 62.87 1lucB 324 64.80 c.1.16.1 29548 2hszA 243 65.81 c.108.1.6 136726 1w6kA 732 66.01 a.102.4.2,a.102.4.2 114271,114272 1vicA 262 69.23 c.68.1.13 100756 1tvkA 440 70.10 c.32.1.1,d.79.2.1 107362,107363 2hcfA 234 71.54 c.108.1.6 136333 2ow6A 1045 71.93 3bhqA 211 72.75 3bu3A 306 73.91 2je8A 848 76.45 3bgaA 1010 77.58 4crxA 322 78.87 a.60.9.1,d.163.1.1 18095,42155 2hoqA 241 80.20 2dg7A 195 81.25 1d3gA 367 81.91 c.1.4.1 28600 2zb9A 214 82.02 1nsj 205 82.36 2ioyA 283 83.40 2b7kA 200 83.88 c.47.1.10 128042 1t5jA 313 85.45 a.209.1.1 99125 3bqoA 211 88.38