# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.78e-57 1tqnA 486 6.76e-57 a.104.1.1 107238 2hi4A 495 2.94e-56 1zo4A 473 9.21e-55 1po5A 476 1.11e-54 a.104.1.1 94963 1r9oA 477 1.29e-54 a.104.1.1 104878 3c6gA 479 5.39e-54 2ij2A 470 2.24e-53 a.104.1.1 137449 2cibA 455 4.09e-53 1h5zA 455 6.15e-53 a.104.1.1 90622 2ve3A 444 6.54e-53 1jpzA 473 8.47e-53 a.104.1.1 67069 1bu7A 455 1.59e-52 a.104.1.1 18937 1u13A 455 4.13e-52 a.104.1.1 107578 1x8vA 455 9.00e-52 a.104.1.1 114968 2iagA 482 9.26e-52 3b98A 475 4.49e-50 3b6hA 498 8.01e-50 1qmqA 414 6.20e-47 a.104.1.1 18907 1yrcA 414 1.33e-46 a.104.1.1 123917 1dz4A 414 2.23e-46 a.104.1.1 18903 1izoA 417 2.70e-45 a.104.1.1 83851 1cpt 412 9.96e-45 1n97A 389 1.24e-44 a.104.1.1 80335 1jfbA 404 8.25e-43 a.104.1.1 66624 1f24A 402 1.68e-42 a.104.1.1 18953 2d09A 407 2.25e-42 1z8oA 404 3.63e-42 a.104.1.1 124722 1jipA 403 3.91e-42 a.104.1.1 66748 2d0eA 407 4.07e-42 1q5dA 419 5.46e-42 a.104.1.1 95891 1lfkA 398 1.03e-41 a.104.1.1 77926 1t2bA 397 1.09e-41 1uedA 406 1.79e-41 a.104.1.1 99256 1eupA 403 3.83e-41 a.104.1.1 18967 1odoA 408 5.88e-41 a.104.1.1 92783 1gwiA 411 7.22e-41 a.104.1.1 76364 1s1fA 406 1.09e-40 a.104.1.1 112008 1n40A 396 3.48e-40 a.104.1.1 79977 1cptA 428 9.55e-38 a.104.1.1 18968 2fr7A 412 1.19e-37 1io7A 368 9.17e-36 a.104.1.1 18971 3bujA 397 1.00e-34 3bdzA 397 1.95e-34 2z3tA 425 3.22e-33 2zbxA 412 3.32e-33 2uuqA 414 9.59e-33 2rfbA 343 1.39e-30 2kfnA 605 6.568 c.55.3.5,e.8.1.1 33682,42975 1zj8A 566 9.201 1u7kA 131 11.21 a.73.1.1 113087 1knwA 425 13.58 b.49.2.3,c.1.6.1 90969,90970 2bs2A 660 15.03 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1s0pA 176 16.84 a.192.1.1 98300 2qy6A 257 17.28 2p3eA 420 19.10 1h65A 270 19.70 c.37.1.8 65640 1w63A 618 23.68 i.23.1.1 109192 2g7gA 213 24.23 a.4.1.9,a.121.1.1 134732,134733 2c40A 312 25.62 2vglA 621 26.71 1uouA 474 27.83 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2bpqA 373 28.37 2b4pA 334 29.58 3bjuA 521 30.37 2dorA 311 31.18 c.1.4.1 28593 1mi3A 322 31.68 c.1.7.1 91274 3bgyA 237 31.92 2aeuA 374 33.86 c.67.1.8 126646 1vp4A 425 43.19 c.67.1.1 113935 1t0qA 498 43.79 a.25.1.2 106220 3bu8A 235 44.37 2b4uA 335 44.80 2uubD 209 45.70 d.66.1.2 139935 2ovkC 159 48.63 1c7nA 399 49.07 c.67.1.3 34413 1f0jA 377 49.49 a.211.1.2 19346 1mnnA 340 52.96 b.2.5.7 79324 2j0wA 449 55.32 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1yoeA 322 55.42 2ousA 331 56.85 2e5vA 472 56.98 1txjA 171 59.01 b.88.1.2 107424 1aw9A 216 62.32 a.45.1.1,c.47.1.5 17736,33030 2sqcA 631 66.16 a.102.4.2,a.102.4.2 18854,18855 2c0cA 362 69.40 2j66A 428 69.83 2r8qA 359 70.61 1fwxA 595 71.01 b.6.1.4,b.69.3.1 60069,60070 2inpA 494 71.41 1yslA 402 71.77 2qjcA 262 72.54 2pvqA 201 75.13 1wyzA 242 75.99 c.90.1.1 121471 1dfcA 493 77.96 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 2aqjA 538 78.73 1eovA 487 78.83 b.40.4.1,d.104.1.1 25239,40760 1v5vA 401 84.75 b.44.2.1,d.250.1.1 113539,113540 1wosA 364 84.75 b.44.2.1,d.250.1.1 109468,109469 2fxtA 192 86.04 2e5iA 124 87.53