# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 3.35e-60 a.104.1.1 107238 2hi4A 495 3.09e-59 2fdvA 476 3.34e-59 1po5A 476 1.67e-57 a.104.1.1 94963 1r9oA 477 3.85e-57 a.104.1.1 104878 1zo4A 473 8.07e-57 3c6gA 479 3.58e-56 2cibA 455 4.23e-56 1h5zA 455 4.45e-56 a.104.1.1 90622 2ij2A 470 9.22e-56 a.104.1.1 137449 2ve3A 444 3.64e-55 1u13A 455 5.85e-55 a.104.1.1 107578 1jpzA 473 8.10e-55 a.104.1.1 67069 1x8vA 455 1.87e-54 a.104.1.1 114968 1bu7A 455 2.31e-54 a.104.1.1 18937 2iagA 482 4.56e-54 3b98A 475 3.00e-53 3b6hA 498 1.95e-52 1qmqA 414 1.21e-48 a.104.1.1 18907 1yrcA 414 3.05e-48 a.104.1.1 123917 1dz4A 414 4.67e-48 a.104.1.1 18903 1izoA 417 9.58e-47 a.104.1.1 83851 1n97A 389 1.32e-46 a.104.1.1 80335 1cpt 412 3.33e-46 1jfbA 404 1.30e-44 a.104.1.1 66624 1f24A 402 2.96e-44 a.104.1.1 18953 1z8oA 404 3.47e-44 a.104.1.1 124722 2d09A 407 4.18e-44 1jipA 403 4.34e-44 a.104.1.1 66748 1q5dA 419 9.48e-44 a.104.1.1 95891 2d0eA 407 1.15e-43 1uedA 406 1.97e-43 a.104.1.1 99256 1lfkA 398 2.09e-43 a.104.1.1 77926 1eupA 403 3.90e-43 a.104.1.1 18967 1s1fA 406 5.57e-43 a.104.1.1 112008 1t2bA 397 7.41e-43 1gwiA 411 1.88e-42 a.104.1.1 76364 1odoA 408 5.10e-42 a.104.1.1 92783 1n40A 396 8.65e-41 a.104.1.1 79977 1cptA 428 5.23e-39 a.104.1.1 18968 2fr7A 412 1.07e-38 1io7A 368 1.84e-37 a.104.1.1 18971 3bdzA 397 1.82e-35 3bujA 397 2.01e-35 2z3tA 425 1.38e-34 2zbxA 412 2.08e-34 2uuqA 414 6.62e-34 2rfbA 343 5.03e-32 2e5iA 124 0.9903 1urnA 97 4.019 d.58.7.1 39153 1l3kA 196 5.494 d.58.7.1,d.58.7.1 73539,73540 1oiaA 95 6.047 d.58.7.1 87051 1s0pA 176 7.017 a.192.1.1 98300 2ax3A 502 7.575 c.72.1.4,c.104.1.1 127477,127478 2pe8A 105 7.727 2dorA 311 8.976 c.1.4.1 28593 2b4pA 334 9.758 2kfnA 605 10.35 c.55.3.5,e.8.1.1 33682,42975 1nu4A 97 10.47 d.58.7.1 80731 1u5tA 233 14.81 a.4.5.54,a.4.5.54 107684,107685 1ha1 184 15.88 1u7kA 131 17.32 a.73.1.1 113087 1eovA 487 23.38 b.40.4.1,d.104.1.1 25239,40760 2qfjA 216 23.64 1jqoA 970 24.23 c.1.12.3 77160 1h65A 270 24.99 c.37.1.8 65640 2b4uA 335 26.79 2p2vA 288 32.71 2p6wA 213 33.36 1iuhA 198 33.43 d.61.1.2 83711 2c0cA 362 36.51 1jubA 311 38.00 c.1.4.1 90908 2qguA 211 38.51 1whxA 111 39.44 d.58.7.1 114654 2adcA 229 42.74 d.58.7.1,d.58.7.1 126582,126583 2p3eA 420 47.04 1w36D 608 47.60 c.37.1.19,c.37.1.19 114128,114129 2g7gA 213 48.73 a.4.1.9,a.121.1.1 134732,134733 1vp4A 425 49.52 c.67.1.1 113935 2r5fA 264 50.04 2go9A 161 50.43 1h6kZ 98 51.00 d.58.7.1 60686 2h0qA 261 54.21 1h7wA 1025 54.83 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2adbA 148 56.04 d.58.7.1 126581 1u6bA 98 57.60 d.58.7.1 107703 1sjqA 105 59.24 d.58.7.1 105660 1tbfA 347 61.00 a.211.1.2 106743 2pziA 681 62.29 1ars 396 63.06 1s3rA 535 67.01 2pt0A 340 67.03 1rkpA 326 68.06 a.211.1.2 97620 2ikqA 270 69.29 2q3wA 111 69.92 b.33.1.1 139813 1mi3A 322 71.05 c.1.7.1 91274 2h7oA 303 71.08 1m7xA 617 71.28 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2o8nA 265 72.71 2hzlA 365 73.45 2genA 197 73.98 a.4.1.9,a.121.1.1 135062,135063 1dorA 311 76.50 c.1.4.1 28595 1nd4A 264 76.95 d.144.1.6 91815 2bb6A 414 77.73 1j79A 347 79.24 c.1.9.4 62675 1vplA 256 79.89 c.37.1.12 113966 2qedA 258 80.15 1a7jA 290 81.49 c.37.1.6 31952 2cprA 124 85.88 a.60.8.4 130705 2f9dA 125 87.45 d.58.7.1 133159 3ce9A 354 88.89