# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 1.07e-41 a.104.1.1 107238 2fdvA 476 3.75e-41 2hi4A 495 1.58e-40 1po5A 476 4.55e-39 a.104.1.1 94963 1r9oA 477 5.54e-39 a.104.1.1 104878 3c6gA 479 8.88e-39 1zo4A 473 1.38e-37 2ij2A 470 2.46e-37 a.104.1.1 137449 1bu7A 455 2.56e-37 a.104.1.1 18937 1jpzA 473 1.20e-36 a.104.1.1 67069 2cibA 455 1.22e-36 2ve3A 444 1.36e-36 1h5zA 455 3.03e-36 a.104.1.1 90622 1x8vA 455 3.40e-36 a.104.1.1 114968 2iagA 482 4.96e-36 1u13A 455 6.20e-36 a.104.1.1 107578 3b6hA 498 1.73e-35 3b98A 475 2.50e-34 1qmqA 414 5.76e-32 a.104.1.1 18907 1dz4A 414 2.18e-31 a.104.1.1 18903 1yrcA 414 4.06e-31 a.104.1.1 123917 1f24A 402 6.08e-30 a.104.1.1 18953 1jfbA 404 8.62e-30 a.104.1.1 66624 1t2bA 397 8.92e-30 1z8oA 404 1.14e-29 a.104.1.1 124722 1jipA 403 2.12e-29 a.104.1.1 66748 1izoA 417 3.49e-29 a.104.1.1 83851 1eupA 403 3.86e-29 a.104.1.1 18967 1n97A 389 7.95e-29 a.104.1.1 80335 1odoA 408 8.07e-29 a.104.1.1 92783 1uedA 406 1.31e-28 a.104.1.1 99256 2d09A 407 6.83e-28 1s1fA 406 7.11e-28 a.104.1.1 112008 1gwiA 411 8.47e-28 a.104.1.1 76364 1n40A 396 2.54e-27 a.104.1.1 79977 1q5dA 419 2.91e-27 a.104.1.1 95891 1cpt 412 3.86e-27 2d0eA 407 4.32e-27 1lfkA 398 1.62e-26 a.104.1.1 77926 3bdzA 397 4.09e-26 1cptA 428 5.49e-26 a.104.1.1 18968 2fr7A 412 5.63e-26 2zbxA 412 3.49e-25 1io7A 368 1.85e-24 a.104.1.1 18971 3bujA 397 2.12e-23 2z3tA 425 5.31e-23 2uuqA 414 1.78e-22 2rfbA 343 4.94e-21 1jubA 311 4.563 c.1.4.1 90908 2gfiA 458 4.857 2dorA 311 6.690 c.1.4.1 28593 1knwA 425 8.650 b.49.2.3,c.1.6.1 90969,90970 2ashA 381 9.200 1fecA 490 9.329 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1sxjC 340 10.23 a.80.1.1,c.37.1.20 106085,106086 2o0tA 467 10.59 1rwhA 757 11.50 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2qjtA 352 11.56 1uc2A 481 11.58 d.261.1.1 99161 1oltA 457 11.65 c.1.28.2 93334 3bixA 574 12.47 2a73B 991 12.66 1dorA 311 12.75 c.1.4.1 28595 1gvfA 286 13.01 c.1.10.2 70599 2j66A 428 13.42 1ddzA 496 13.49 c.53.2.1,c.53.2.1 33372,33373 1p0iA 529 17.43 c.69.1.1 93867 1tv8A 340 17.44 c.1.28.3 107352 1mo9A 523 18.23 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1kssA 571 18.36 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1ynfA 458 18.80 d.126.1.7 123723 2abqA 306 19.58 c.72.1.1 126528 1gesA 450 19.94 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1dd9A 338 21.39 e.13.1.1 43254 1zmdA 474 23.40 1jihA 531 23.57 d.240.1.1,e.8.1.7 90374,90375 1fj2A 232 23.97 c.69.1.14 34720 1hyuA 521 24.60 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1a9xA 1058 24.67 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1t8tA 271 27.33 c.37.1.5 106685 3grs 478 27.89 1ea9C 583 28.17 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1ivyA 452 28.63 c.69.1.5 34654 2c81A 418 29.04 3b4uA 294 29.46 1zk7A 467 30.51 3bwwA 307 31.28 1hr6B 443 33.31 d.185.1.1,d.185.1.1 61166,61167 2f1kA 279 33.38 a.100.1.12,c.2.1.6 132772,132773 1e39A 571 33.52 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 2j7uA 635 35.55 2gh1A 301 36.30 c.66.1.49 135170 1j99A 293 36.83 c.37.1.5 71618 3tmkA 216 37.63 c.37.1.1 31920 2fnaA 357 38.43 a.4.5.11,c.37.1.20 133809,133810 2f2hA 773 39.07 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1kyhA 276 40.25 c.72.1.4 73222 2yquA 455 40.92 2q3mA 326 41.80 c.37.1.5 139795 1rqbA 539 41.88 a.5.7.2,c.1.10.5 105057,105058 2v9dA 343 42.39 1wz9A 375 43.25 1j5sA 463 44.93 c.1.9.8 71580 1v97A 1332 45.20 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1gytA 503 46.99 c.50.1.1,c.56.5.3 70765,70766 1xa3A 437 51.24 c.123.1.1 115025 1t08A 519 51.42 a.118.1.1 112190 2r8wA 332 51.77 2qf7A 1165 52.70 1kfcA 268 54.25 c.1.2.4 77371 1y8qA 346 56.59 1vlbA 907 56.75 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1l3lA 234 57.13 a.4.6.2,d.110.5.1 73541,73542 2qcvA 332 57.14 1qo8A 566 57.83 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1eyzA 392 58.51 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1j1iA 296 58.71 c.69.1.10 83977 1wf3A 301 58.85 c.37.1.8,d.52.3.1 114574,114575 1txuA 273 59.24 a.222.1.1 107439 1n3lA 372 60.19 c.26.1.1 79966 2a2aA 321 60.51 2e4uA 555 60.77 1ryiA 382 63.47 c.3.1.2,d.16.1.3 118813,118814 2cjqA 720 63.58 2r9zA 463 63.61 1din 236 63.88 1nksA 194 63.95 c.37.1.1 31886 2pmbA 462 64.54 2bp1A 360 65.46 2pidA 356 67.81 2va8A 715 68.48 1ea5A 537 70.00 c.69.1.1 34592 1pz1A 333 70.17 c.1.7.1 95390 1kjqA 391 70.33 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1xg5A 279 71.57 c.2.1.2 115277 1xdiA 499 71.99 c.3.1.5,d.87.1.1 115160,115161 2au3A 407 72.05 1ejxC 567 72.29 b.92.1.1,c.1.9.2 83184,83185 1obbA 480 72.31 c.2.1.5,d.162.1.2 86760,86761 1sl8A 191 74.19 a.39.1.5 112099 2v1xA 591 74.56 2cyaA 364 75.26 1vkjA 285 75.57 c.37.1.5 108666 1ywfA 296 76.24 c.45.1.5 124144 1nrwA 288 77.15 c.108.1.10 86128 2qgqA 304 77.64 1xsjA 778 78.16 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2nuwA 288 79.23 2iyfA 430 79.26 1ukcA 522 79.34 c.69.1.17 107911 2qk2A 242 79.37 1h3fA 432 79.41 c.26.1.1,d.66.1.4 76631,76632 1n62B 809 79.46 d.41.1.1,d.133.1.1 80092,80093 1xk7A 408 80.83 c.123.1.1 122071 1g71A 347 82.07 d.264.1.1 43268 3grsA 478 82.30 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2dh2A 424 82.82 1n3yA 198 83.42 c.62.1.1 79976 1g97A 459 84.15 b.81.1.4,c.68.1.5 60394,60395 1ku1A 230 85.14 a.118.3.1 72996 2v6oA 596 85.22 1xg7A 250 85.72 a.96.1.6 115281 1gveA 327 86.24 c.1.7.1 70597 2cycA 375 86.24 2c2qA 199 86.96 2c1vA 338 87.28 2e5iA 124 87.31 1vm7A 311 87.67 c.72.1.1 108884 7odcA 424 87.78 b.49.2.3,c.1.6.1 26488,28650 1m2oA 768 88.06 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2gjlA 328 88.33