Best Alignments for T0429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bkdN/T0429-2bkdN-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkdN/T0429-2bkdN-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1991e+005.70e-15
2qqrA/T0429-2qqrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qqrA/T0429-2qqrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8259e+003.61e-08
1vi3A/T0429-1vi3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vi3A/T0429-1vi3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8907e+005.24e-02 b.17.1.2
1i8dA/T0429-1i8dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i8dA/T0429-1i8dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0297e+002.90e-12 b.43.4.3
b.43.4.3
2gfaA/T0429-2gfaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfaA/T0429-2gfaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0468e+008.40e-09 b.34.9.1
b.34.9.1
2ckkA/T0429-2ckkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ckkA/T0429-2ckkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0217e+012.12e-13
2qpwA/T0429-2qpwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qpwA/T0429-2qpwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2372e+016.66e-04
2bivA/T0429-2bivA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bivA/T0429-2bivA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3068e+016.17e-14 b.34.9.3
b.34.9.3
1s0uA/T0429-1s0uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s0uA/T0429-1s0uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3098e+019.07e-10 b.43.3.1
b.44.1.1
c.37.1.8
1bkbA/T0429-1bkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bkbA/T0429-1bkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4425e+014.25e-06 b.34.5.2
b.40.4.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001