# List of top-scoring protein chains for T0429.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fjjA 159 7.14e+00 1fjjA b.17.1.2 59852 1d2sA 170 7.75e+00 1d2sA b.29.1.4 24221 1lhwA 189 8.43e+00 b.29.1.4 77966 1f5fA 205 8.56e+00 1d2sA b.29.1.4 24222 1kdkA 177 8.60e+00 b.29.1.4 72351 1vi3A 170 9.04e+00 b.17.1.2 100730 2nn6G 289 1.55e+01 1z1zA 131 1.93e+01 d.323.1.1 124366 1i4tD 192 1.97e+01 c.37.1.8 61731 1e96A 192 1.97e+01 1ctqA c.37.1.8 32007 2bmjA 178 2.05e+01 c.37.1.8 128797 2iwrA 178 2.33e+01 1ew3A 159 2.42e+01 1mup b.60.1.1 27114 2q7sA 290 2.91e+01 2q3rA 372 3.03e+01 c.1.4.1 139801 2nnwA 376 3.55e+01 1qspA 165 3.58e+01 1qspA a.24.10.2 16639 1oxkA 166 3.59e+01 a.24.10.2 93690 1c03A 168 3.60e+01 1qspA a.24.10.2 16635 2r25A 167 3.60e+01 1he1C 176 3.63e+01 1ctqA c.37.1.8 32003 2nz8A 177 3.65e+01 c.37.1.8 138837 2fjuA 178 3.67e+01 c.37.1.8 133622 2qmeA 179 3.81e+01 2ic5A 180 3.83e+01 1i4dD 192 3.89e+01 1ctqA c.37.1.8 61684 2c2hA 192 3.93e+01 c.37.1.8 129668 1fyxA 149 4.07e+01 1fyvA c.23.2.1 31128 2hveA 152 4.12e+01 1s1iQ 100 4.41e+01 i.1.1.1 105191 1s1iC 386 4.44e+01 i.1.1.1 105177 1c02A 166 4.75e+01 1qspA a.24.10.2 16633 1f8fA 371 5.10e+01 b.35.1.2,c.2.1.1 83246,83247 1f8wA 447 5.30e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 1npxA 447 5.32e+01 c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 2diqA 110 5.56e+01 b.34.9.1 131531 1qjhA 101 5.77e+01 1ris d.58.14.1 39326 1g4uR 184 5.86e+01 1ctqA c.37.1.8 32005 3b4uA 294 5.86e+01 1isiA 265 5.88e+01 c.23.14.3 71394 1nhqA 447 5.93e+01 c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 1mh1A 186 5.95e+01 c.37.1.8 32002 2p2lA 188 5.97e+01 c.37.1.8 139465 1hh4A 192 6.09e+01 c.37.1.8 61037 1nhrA 447 6.10e+01 c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 2oiwA 136 6.11e+01 1jeyA 609 6.18e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 2qpwA 149 6.28e+01 1gwyA 175 6.29e+01 b.97.1.1 83356 1ehsA 48 6.30e+01 g.2.1.1 43998 3cddA 361 6.37e+01 1nhpA 447 6.61e+01 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1fywA 149 6.77e+01 1fyvA c.23.2.1 31129 1ds6A 192 6.77e+01 1ctqA c.37.1.8 32006 2d9rA 104 6.77e+01 b.129.2.1 131350 2fhxA 246 7.25e+01 2jp2A 126 7.29e+01 1ucnA 152 7.31e+01 d.58.6.1 99183 1o77A 146 7.33e+01 c.23.2.1 81125 1bpvA 112 7.36e+01 b.1.2.1 22071 1mzjA 339 7.49e+01 c.95.1.2,c.95.1.2 79700,79701 2fmdA 240 7.57e+01 1ryhA 203 7.64e+01 c.37.1.8 98102 1n6zA 105 7.80e+01 d.263.1.1 85369 2zkrk 140 7.86e+01 2vpiA 218 7.93e+01