# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vi3A 170 1.19e+00 b.17.1.2 100730 1fjjA 159 1.32e+00 1fjjA b.17.1.2 59852 1f5fA 205 1.90e+00 1d2sA b.29.1.4 24222 1d2sA 170 2.26e+00 1d2sA b.29.1.4 24221 3b9tA 484 2.45e+00 2bkdN 134 3.40e+00 1bcpB 199 3.79e+00 1bcpB b.40.2.1,d.169.1.2 25120,42429 1zc1A 208 4.56e+00 1o91A 178 5.07e+00 b.22.1.1 92656 1ew3A 159 5.31e+00 1mup b.60.1.1 27114 1o7sA 127 5.65e+00 b.1.1.1 86644 2qpwA 149 6.40e+00 2qqrA 118 6.97e+00 2qf4A 172 7.29e+00 2qfeA 148 7.39e+00 2gfaA 119 8.49e+00 b.34.9.1,b.34.9.1 135089,135090 2uvfA 608 8.54e+00 1e0tA 470 8.78e+00 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1gmiA 136 8.87e+00 b.7.1.1 65309 2rerA 173 8.92e+00 2iwrA 178 9.89e+00 1nhcA 336 9.97e+00 b.80.1.3 91879 1kdkA 177 1.02e+01 b.29.1.4 72351 1f8fA 371 1.05e+01 b.35.1.2,c.2.1.1 83246,83247 2bmjA 178 1.08e+01 c.37.1.8 128797 1jqpA 438 1.11e+01 b.61.5.1,d.3.1.1 77162,77163 1iznB 277 1.14e+01 e.43.1.2 83848 1pbyB 337 1.17e+01 b.69.2.2 94422 1c28A 135 1.32e+01 1c28A b.22.1.1 23857 2bj7A 138 1.37e+01 a.43.1.3,d.58.18.4 128608,128609 1kfuL 699 1.38e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1nkoA 132 1.40e+01 b.1.1.1 85829 1qwdA 177 1.40e+01 b.60.1.1 96471 3cb0A 173 1.50e+01 1avbA 226 1.55e+01 1led b.29.1.1 24158 1fuxA 166 1.62e+01 1fjjA b.17.1.2 60034 2acoA 173 1.72e+01 2d9rA 104 1.73e+01 b.129.2.1 131350 1yewA 382 1.82e+01 2eifA 136 1.86e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 2hsiA 282 1.91e+01 1on0A 158 1.96e+01 d.108.1.1 87095 3b5mA 205 1.99e+01 1ufhA 180 1.99e+01 d.108.1.1 88485 1ggxA 223 2.08e+01 1ggxA d.22.1.1 38367 2qecA 204 2.12e+01 1p16A 395 2.18e+01 b.40.4.6,d.142.2.3 87661,87662 2q4zA 312 2.18e+01 1n62C 288 2.19e+01 d.87.2.1,d.145.1.3 80094,80095 1zgoA 223 2.21e+01 2q7nA 488 2.23e+01 2re9A 181 2.24e+01 2g50A 530 2.25e+01 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1zxiC 288 2.26e+01 d.87.2.1,d.145.1.3 125776,125777 2gu2A 312 2.26e+01 1gwyA 175 2.33e+01 b.97.1.1 83356 2eabA 899 2.44e+01 2g5rA 127 2.47e+01 b.1.1.1 134674 2ejoA 223 2.49e+01 1p3wA 404 2.54e+01 c.67.1.3 87752 1ioaA 240 2.54e+01 1led b.29.1.1 24168 2it1A 362 2.55e+01 1wkoA 180 2.57e+01 1behA 187 2.59e+01 1a44 b.17.1.1 23700 1mh1 186 2.73e+01 1eesA 1mh1A 186 2.73e+01 c.37.1.8 32002 1cr5A 189 2.76e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1a36A 592 2.83e+01 1a36A a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1yqfA 203 2.91e+01 d.25.1.1 123880 2fgsA 179 2.91e+01 1b7aA 186 2.94e+01 1a44 b.17.1.1 23705 1o75A 415 2.97e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1f60A 458 3.04e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 3c9aA 223 3.08e+01 1rl2A 137 3.16e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1smoA 119 3.24e+01 b.1.1.1 105764 2cy9A 140 3.36e+01 d.38.1.5 131019 1rc6A 261 3.43e+01 b.82.1.11 97287 1k3bA 119 3.44e+01 b.61.5.1 72016 2qxlA 658 3.49e+01 2hf0A 316 3.61e+01 1wgvA 124 3.61e+01 b.15.1.4 114624 2f7fA 494 3.61e+01 c.1.17.1,d.41.2.1 133088,133089 2bz8A 58 3.75e+01 1ktjA 129 3.92e+01 b.1.18.7 72974 2vadA 223 3.93e+01 2a46A 238 3.93e+01 1zunB 434 3.93e+01 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1vmfA 145 3.96e+01 d.273.1.1 113673 2hu5A 582 4.03e+01 b.69.7.2,c.69.1.33 136763,136764 2bpsA 81 4.10e+01 1yoxA 250 4.18e+01 b.82.5.2 123789 1ee6A 197 4.34e+01 1ee6A b.80.1.1 28024 2fbeA 201 4.39e+01 b.29.1.22 133241 3bxoA 239 4.56e+01 1thjA 214 4.59e+01 1qreA b.81.1.5 28072 1om1A 332 4.65e+01 d.144.1.7 93347 1z8gA 372 4.68e+01 b.47.1.2,d.170.1.2 124697,124698 1t0pB 86 4.73e+01 1pamA 686 4.74e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 3b9jB 350 4.76e+01 1fiqB 350 4.80e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 2bonA 332 4.81e+01 1m2rA 327 4.84e+01 d.144.1.7 84760 2p0wA 324 4.90e+01 1ybiA 288 4.93e+01 2bgzA 299 4.97e+01 1i5pA 633 4.99e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1wthD 391 4.99e+01 b.106.1.1,b.106.1.1 121268,121269 3ck2A 176 5.02e+01 2hqxA 246 5.03e+01 b.34.9.1 136675 2ak5A 64 5.05e+01 1s0uA 408 5.07e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2g3rA 123 5.09e+01 b.34.9.1,b.34.9.1 134570,134571 2q86A 229 5.12e+01 1a31A 538 5.18e+01 1a36A d.163.1.2,e.15.1.1 42170,43263 1xwvA 129 5.28e+01 b.1.18.7 116134 1p97A 114 5.38e+01 d.110.3.7 94382 1af6A 421 5.41e+01 2mprA f.4.3.2 43772 1c3hA 137 5.50e+01 b.22.1.1 90405 3hmgA 328 5.51e+01 1hgeA b.19.1.2 23825 1u2hA 99 5.52e+01 3cpnA 330 5.56e+01 1wlgA 299 5.68e+01 b.152.1.1 114726 1ylnA 252 5.69e+01 b.45.2.1,b.45.2.2 123657,123658 1a35A 538 5.80e+01 1a36A d.163.1.2,e.15.1.1 42171,43264 1ig0A 319 5.83e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 2nn6H 308 5.88e+01 1j1tA 233 5.88e+01 b.29.1.18 90771 1hkfA 122 5.93e+01 b.1.1.1 83553 2qtpA 194 6.00e+01 1o63A 219 6.04e+01 c.94.1.1 92540 1yezA 68 6.12e+01 b.40.4.12 123026 1jhfA 202 6.12e+01 a.4.5.2,b.87.1.1 63057,63058 1utiA 58 6.15e+01 b.34.2.1 99962 1n9lA 109 6.18e+01 d.110.3.6 85468 1rzfH 235 6.34e+01 b.1.1.1,b.1.1.2 98150,98151 2rdeA 251 6.39e+01 2p4mA 219 6.41e+01 2f1wA 158 6.43e+01 1k42A 168 6.47e+01 b.18.1.14 72032 1li1A 229 6.50e+01 d.169.1.6,d.169.1.6 73898,73899 1oebA 62 6.50e+01 b.34.2.1 86909 2tbvA 387 6.53e+01 2tbvA b.121.4.7 23302 2viuA 328 6.56e+01 1hgeA b.19.1.2 23797 3be4A 217 6.58e+01 2c2hA 192 6.62e+01 c.37.1.8 129668 2q3zA 687 6.64e+01 2iqyA 190 6.64e+01 1rdzA 337 6.67e+01 1frpA e.7.1.1 42882 1btn 106 6.69e+01 1btn 1btnA 106 6.69e+01 b.55.1.1 26952 1ihjA 98 6.72e+01 1pdr b.36.1.1 62382 1gr3A 160 6.74e+01 b.22.1.1 65476 2b7uA 257 6.88e+01 1qreA 247 6.91e+01 1qreA b.81.1.5 28066 1t16A 427 6.93e+01 f.4.3.4 106242 1kzlA 208 6.94e+01 b.43.4.3,b.43.4.3 77635,77636 2hx0A 154 6.95e+01 d.290.1.3 136830 2arhA 203 6.97e+01 d.108.1.9 127197 1xovA 326 6.98e+01 b.34.11.4,c.56.5.6 122206,122207 1mkaA 171 7.02e+01 1mkaA d.38.1.2 38543 2g6fX 59 7.08e+01 1i8dA 213 7.09e+01 b.43.4.3,b.43.4.3 61953,61954 1hr0W 71 7.25e+01 1ah9 b.40.4.5 25329 2o8qA 134 7.30e+01 1d4vB 163 7.42e+01 1d4vB b.22.1.1 23884 2rc5A 314 7.48e+01 1upsA 420 7.49e+01 b.29.1.2,b.42.2.3 113394,113395 1frpA 335 7.56e+01 1frpA e.7.1.1 42875 1xniA 118 7.61e+01 b.34.9.1,b.34.9.1 115582,115583 1epaA 164 7.69e+01 1epaA b.60.1.1 27128 2pvrA 334 7.72e+01 1fviA 297 7.74e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 2obdA 476 7.79e+01 1icpA 376 7.80e+01 1oyc c.1.4.1 62270 3cddA 361 7.98e+01