# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vi3A 170 1.08e+00 b.17.1.2 100730 1fjjA 159 1.19e+00 1fjjA b.17.1.2 59852 2oiwA 136 1.70e+00 1f2rI 100 3.91e+00 1c9fA d.15.2.1 37641 1r71A 178 4.82e+00 a.4.14.1 104823 1hhnA 101 5.06e+00 1hhnA b.104.1.1 61043 1vhoA 346 5.47e+00 b.49.3.1,c.56.5.4 100694,100695 1ibxB 145 9.22e+00 1c9fA d.15.2.1 62232 1vh6A 145 9.51e+00 a.24.19.1 100644 2bpsA 81 9.83e+00 1jhnA 424 1.02e+01 b.104.1.1,b.29.1.12 66722,70060 1ew3A 159 1.02e+01 1mup b.60.1.1 27114 1zy4A 303 1.24e+01 2fywA 267 1.35e+01 c.135.1.1 134408 2q0zX 339 1.36e+01 1fyxA 149 1.42e+01 1fyvA c.23.2.1 31128 1wv8A 73 1.44e+01 d.304.1.1 121326 2gfaA 119 1.45e+01 b.34.9.1,b.34.9.1 135089,135090 2gu2A 312 1.82e+01 1do0A 442 1.84e+01 1do0A c.37.1.20 32432 1jjgA 102 1.98e+01 b.40.4.5 71696 2q4zA 312 2.30e+01 2ptfA 233 2.32e+01 1wgvA 124 2.37e+01 b.15.1.4 114624 1v9jA 113 2.40e+01 d.52.6.1 100542 1v5pA 126 2.50e+01 b.55.1.1 108382 2qpwA 149 2.53e+01 1vheA 373 2.55e+01 b.49.3.1,c.56.5.4 100669,100670 2qg5A 294 2.61e+01 1sctB 151 2.68e+01 3sdhA a.1.1.2 15003 2eifA 136 3.15e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 2a74B 188 3.23e+01 2z0lA 318 3.45e+01 1kr4A 125 3.52e+01 d.58.5.2 72889 1xo3A 101 3.53e+01 d.15.3.3 115678 1at3A 247 3.70e+01 1at3A b.57.1.1 27021 1qrdA 273 3.81e+01 1d4aA c.23.5.3 31217 2qfeA 148 3.92e+01 2qqrA 118 3.95e+01 2qkhA 135 4.03e+01 1z1zA 131 4.54e+01 d.323.1.1 124366 2q1zA 184 4.63e+01 1wkoA 180 4.63e+01 1mzjA 339 4.69e+01 c.95.1.2,c.95.1.2 79700,79701 1aonO 97 4.78e+01 b.35.1.1 24642 2a19B 284 4.86e+01 2jqoA 108 4.94e+01 1btn 106 5.29e+01 1btn 1btnA 106 5.29e+01 b.55.1.1 26952 1ufhA 180 5.35e+01 d.108.1.1 88485 2nyuA 196 5.37e+01 2rk9A 145 5.38e+01 2ij2A 470 5.50e+01 a.104.1.1 137449 1wqgA 185 5.54e+01 1fuxA 166 5.62e+01 1fjjA b.17.1.2 60034 1gd5A 130 5.79e+01 1gd5A d.189.1.1 60439 1d4aA 273 5.91e+01 1d4aA c.23.5.3 31219 1xuvA 178 5.93e+01 d.129.3.5 116069 1p9yA 121 5.96e+01 d.241.2.1 94402 2qsfX 171 5.98e+01 2yv9A 291 5.99e+01 1weuA 91 6.05e+01 g.50.1.2 114565 1jm7B 117 6.18e+01 g.44.1.1 66881 1fmjA 351 6.22e+01 c.37.1.5 59879 2c43A 323 6.23e+01 1zo4A 473 6.27e+01 3bchA 253 6.39e+01 1p42A 270 6.49e+01 d.14.1.7,d.14.1.7 87754,87755 2v5jA 287 6.55e+01 2qkiB 188 6.59e+01 2bl5A 140 6.64e+01 d.51.1.1 128728 2cn5A 329 6.64e+01 1jpzA 473 6.65e+01 a.104.1.1 67069 2nn6H 308 6.79e+01 1bb9 115 7.14e+01 1bb9 1bb9A 115 7.14e+01 b.34.2.1 24554 1wgkA 114 7.24e+01 d.15.3.3 114614 2i1oA 398 7.26e+01 1o7kA 131 7.28e+01 d.189.1.1 81144 2gw2A 198 7.31e+01 2b9uA 176 7.34e+01 1j2mA 99 7.34e+01 a.165.1.1 84018 2go3A 267 7.38e+01 d.14.1.7,d.14.1.7 135422,135423 1uk5A 111 7.42e+01 a.7.7.1 99487 2z10A 194 7.61e+01 1rsy 152 7.67e+01 1rsy 1rsyA 152 7.67e+01 b.7.1.2 23192 1sfxA 109 7.71e+01 a.4.5.50 105505 1ao7D 204 7.79e+01 1tcrA b.1.1.1 20623 1qbgA 272 7.81e+01 1d4aA c.23.5.3 31227 2f4pA 147 7.95e+01 b.82.1.9 132933