Best Alignments for T0429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2re9A/T0429-2re9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2re9A/T0429-2re9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9121e+001.60e-06
1vi3A/T0429-1vi3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vi3A/T0429-1vi3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0230e+005.90e-02 b.17.1.2
1i8dA/T0429-1i8dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i8dA/T0429-1i8dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3486e+001.59e-09 b.43.4.3
b.43.4.3
1bkbA/T0429-1bkbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bkbA/T0429-1bkbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2734e+002.96e-10 b.34.5.2
b.40.4.5
2bkdN/T0429-2bkdN-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkdN/T0429-2bkdN-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2867e+001.27e-11
2qqrA/T0429-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qqrA/T0429-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6223e+003.52e-10
1rl2A/T0429-1rl2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rl2A/T0429-1rl2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1074e+005.70e-10 1rl2A b.34.5.3
b.40.4.5
1c28A/T0429-1c28A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c28A/T0429-1c28A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9772e+002.30e-02 1c28A b.22.1.1
1eovA/T0429-1eovA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1eovA/T0429-1eovA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0485e+012.94e-09 1b8aA b.40.4.1
d.104.1.1
2qpwA/T0429-2qpwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qpwA/T0429-2qpwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1557e+013.55e-01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001