# List of top-scoring protein chains for T0429.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2nq3A 173 1.68e-11 b.7.1.1 138452 1fjjA 159 1.37e+00 1fjjA b.17.1.2 59852 2ek2A 265 2.32e+00 1vi3A 170 3.04e+00 b.17.1.2 100730 2dv4A 265 5.96e+00 2dv3A 265 6.03e+00 2e08A 265 6.17e+00 2el1A 265 6.35e+00 2dv5A 265 6.48e+00 2ejkA 265 6.58e+00 2herA 368 6.68e+00 1gwyA 175 7.10e+00 b.97.1.1 83356 2e16A 265 7.24e+00 2fgxA 107 7.37e+00 2p5cA 265 7.41e+00 2ed5A 265 7.46e+00 2p5fA 265 7.65e+00 2e15A 265 7.67e+00 2e07A 265 8.09e+00 2qkoA 215 8.31e+00 2egbA 265 8.43e+00 2eeqA 265 8.43e+00 2eglA 265 8.58e+00 2dshA 265 8.74e+00 2el2A 265 9.04e+00 2dxvA 265 9.13e+00 2ejzA 265 9.23e+00 2ekaA 265 9.29e+00 2pciA 265 9.37e+00 2el0A 265 9.39e+00 2eldA 265 9.40e+00 2ek7A 265 9.44e+00 2hutA 265 9.49e+00 2e17A 265 9.51e+00 2e8hA 265 9.52e+00 2eh2A 265 9.55e+00 2pcgA 265 9.55e+00 2dekA 265 9.60e+00 c.90.1.1 131430 2en5A 265 9.62e+00 2egsA 265 9.62e+00 2pckA 265 9.63e+00 2p6iA 265 9.64e+00 2owgA 265 9.64e+00 2ek4A 265 9.69e+00 2e4rA 265 9.71e+00 2e4nA 265 9.73e+00 2ek3A 265 9.73e+00 2el3A 265 9.82e+00 2emrA 265 9.87e+00 2pchA 265 9.95e+00 2eleA 265 9.97e+00 2p9dA 265 9.97e+00 2jp2A 126 1.01e+01 2p6lA 265 1.01e+01 2huvA 265 1.01e+01 2ehcA 265 1.02e+01 2pcaA 265 1.02e+01 2pcmA 265 1.03e+01 2pb6A 265 1.04e+01 2emuA 265 1.04e+01 2pb5A 265 1.04e+01 2eh5A 265 1.06e+01 2p6kA 265 1.06e+01 2dsiA 265 1.07e+01 2dsgA 265 1.08e+01 2e8sA 265 1.09e+01 2p6dA 265 1.11e+01 2qpwA 149 1.14e+01 2dxwA 265 1.14e+01 2ejjA 265 1.16e+01 2owkA 265 1.18e+01 2ed3A 265 1.21e+01 2eh4A 265 1.21e+01 2eniA 265 1.27e+01 2e7rA 265 1.31e+01 2e8qA 265 1.35e+01 2owuA 265 1.38e+01 2z6rA 265 1.43e+01 2owvA 265 1.43e+01 2pb4A 265 1.45e+01 1i4tD 192 1.47e+01 c.37.1.8 61731 1e96A 192 1.47e+01 1ctqA c.37.1.8 32007 2dv7A 265 1.48e+01 1mzjA 339 1.58e+01 c.95.1.2,c.95.1.2 79700,79701 2ehlA 265 1.60e+01 2qg5A 294 1.64e+01 2nn6G 289 1.68e+01 2qngA 199 1.71e+01 1z1zA 131 1.77e+01 d.323.1.1 124366 2yuoA 78 1.78e+01 1he1C 176 1.79e+01 1ctqA c.37.1.8 32003 1u2xA 474 1.80e+01 c.72.1.3 107622 2nz8A 177 1.81e+01 c.37.1.8 138837 2fjuA 178 1.83e+01 c.37.1.8 133622 1pt7A 437 1.88e+01 c.123.1.1 95093 2qmeA 179 1.91e+01 2e8rA 265 1.92e+01 2ic5A 180 1.93e+01 1isiA 265 1.93e+01 c.23.14.3 71394 2dxxA 265 1.94e+01 1i4dD 192 1.99e+01 1ctqA c.37.1.8 61684 2c2hA 192 2.13e+01 c.37.1.8 129668 1yp1A 202 2.17e+01 1ew3A 159 2.34e+01 1mup b.60.1.1 27114 1mxgA 435 2.55e+01 b.71.1.1,c.1.8.1 85193,85194 3cpsA 354 2.57e+01 2jv0A 163 2.58e+01 1ds6A 192 2.71e+01 1ctqA c.37.1.8 32006 1j72A 347 2.74e+01 d.109.1.1,d.109.1.1,d.109.1.1 84127,84128,84129 2e5dA 499 2.76e+01 2gvjA 491 2.77e+01 2h3dA 494 2.86e+01 2gvlA 491 2.86e+01 2p2xA 265 2.89e+01 2g95A 491 2.99e+01 1jhwA 347 3.00e+01 d.109.1.1,d.109.1.1,d.109.1.1 71662,71663,71664 2gtlM 217 3.10e+01 b.61.7.1,g.12.1.1,h.1.32.1 135667,135668,135669 1fzyA 149 3.21e+01 d.20.1.1 65072 2fmdA 240 3.21e+01 2diqA 110 3.28e+01 b.34.9.1 131531 2nnwA 376 3.29e+01 1f8wA 447 3.46e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 1npxA 447 3.48e+01 c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 1ib8A 164 3.66e+01 b.38.2.1,d.52.4.1 71168,71169 2yzjA 169 3.80e+01 1nhqA 447 3.90e+01 c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 1pieA 419 3.92e+01 d.14.1.5,d.58.26.7 94706,94707 2poeA 185 3.92e+01 2q3rA 372 4.12e+01 c.1.4.1 139801 1nhpA 447 4.15e+01 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1nhrA 447 4.19e+01 c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 2c2zB 106 4.30e+01 1qtnB 95 4.57e+01 1pauB 1drwA 273 4.63e+01 c.2.1.3,d.81.1.3 30057,39972 1g7oA 215 4.67e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1g4uR 184 4.69e+01 1ctqA c.37.1.8 32005 1mh1A 186 4.77e+01 c.37.1.8 32002 2p2lA 188 4.79e+01 c.37.1.8 139465 2aliA 158 4.90e+01 d.38.1.1 126976 1hh4A 192 4.95e+01 c.37.1.8 61037 1tteA 215 5.06e+01 a.5.2.1,d.20.1.1 107295,107296 2hveA 152 5.24e+01 1zsxA 347 5.29e+01 1fyxA 149 5.30e+01 1fyvA c.23.2.1 31128 2c43A 323 5.75e+01 2cg5A 319 5.97e+01 2h3bA 494 6.03e+01 1f9eB 89 6.04e+01 1pauB 3b4uA 294 6.11e+01 1qduB 88 6.16e+01 1pauB 1nhsA 447 6.17e+01 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2dhkA 119 6.24e+01 2joiA 118 6.27e+01 2js3A 96 6.31e+01 1jeyA 609 6.32e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 2ogpA 97 6.32e+01 1omsA 121 6.38e+01 d.241.2.1 93350 1w2b5 144 6.45e+01 2e5hA 94 6.51e+01 1d2sA 170 6.62e+01 1d2sA b.29.1.4 24221 2fltA 149 6.68e+01 2hfqA 109 6.99e+01 1lt8A 406 7.02e+01 c.1.26.1 78186 2ftsA 419 7.05e+01 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1umyA 407 7.05e+01 c.1.26.1 99635 1t3eA 421 7.08e+01 b.85.6.1,b.103.1.1,c.57.1.2 106348,106349,106350 2fojA 155 7.09e+01 1wv8A 73 7.13e+01 d.304.1.1 121326 2cf2C 342 7.22e+01 d.38.1.2 130362 2bgxA 261 7.23e+01 a.20.1.1,d.118.1.1 128504,128505 2bmjA 178 7.28e+01 c.37.1.8 128797 1ucnA 152 7.35e+01 d.58.6.1 99183 1udlA 98 7.45e+01 b.34.2.1 99212 2hvdA 152 7.73e+01 d.58.6.1 136801 1yv5A 374 7.76e+01 1nyrA 645 7.83e+01 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 92354,92355,92356,92357 2pbfA 227 7.85e+01 1rcuA 195 7.94e+01 c.129.1.1 97295 2iwrA 178 7.97e+01 2f1wA 158 7.97e+01