# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vi3A 170 2.42e-01 b.17.1.2 100730 1fjjA 159 2.53e-01 1fjjA b.17.1.2 59852 1mzjA 339 8.28e-01 c.95.1.2,c.95.1.2 79700,79701 1isiA 265 2.03e+00 c.23.14.3 71394 2qg5A 294 2.69e+00 1z1zA 131 3.06e+00 d.323.1.1 124366 2yzjA 169 4.36e+00 1p9yA 121 4.54e+00 d.241.2.1 94402 1on0A 158 4.68e+00 d.108.1.1 87095 1gcqA 61 4.86e+00 1ckaA b.34.2.1 60434 2qpwA 149 5.06e+00 2z6rA 265 5.10e+00 2oiwA 136 5.96e+00 2dekA 265 6.47e+00 c.90.1.1 131430 2z0dA 357 6.49e+00 2ak5A 64 6.70e+00 2g6fX 59 6.79e+00 1mhnA 59 6.91e+00 b.34.9.1 84964 1mkaA 171 7.40e+00 1mkaA d.38.1.2 38543 1utiA 58 7.47e+00 b.34.2.1 99962 1ra0A 430 7.53e+00 b.92.1.2,c.1.9.5 111756,111757 2re9A 181 8.67e+00 1x2kA 68 9.38e+00 1wfyA 104 9.40e+00 d.15.1.5 114597 2va1A 256 1.12e+01 2hdaA 64 1.14e+01 1oebA 62 1.21e+01 b.34.2.1 86909 1wflA 74 1.29e+01 g.80.1.1 114586 1uj0A 62 1.29e+01 b.34.2.1 99449 1weuA 91 1.33e+01 g.50.1.2 114565 1mh1 186 1.44e+01 1eesA 1mh1A 186 1.44e+01 c.37.1.8 32002 1r8sA 164 1.47e+01 c.37.1.8 97247 2bv2A 83 1.50e+01 1k4nA 192 1.52e+01 d.32.1.5 72059 1rzfH 235 1.55e+01 b.1.1.1,b.1.1.2 98150,98151 1a0nB 69 1.60e+01 1bbzA b.34.2.1 24469 1hr0W 71 1.60e+01 1ah9 b.40.4.5 25329 2f1wA 158 1.62e+01 2ivyA 101 1.68e+01 1mr3F 181 1.70e+01 c.37.1.8 79422 2f1cX 286 1.79e+01 1tyjA 170 1.81e+01 b.2.2.2 119390 1mxgA 435 1.81e+01 b.71.1.1,c.1.8.1 85193,85194 1mppA 361 1.81e+01 b.50.1.2 26856 2c9oA 456 1.88e+01 1k6wA 426 2.03e+01 b.92.1.2,c.1.9.5 68236,68237 2zejA 184 2.15e+01 2q3zA 687 2.16e+01 1shfA 59 2.29e+01 1bbzA b.34.2.1 24462 1g1cA 99 2.33e+01 b.1.1.4 65078 2f5kA 102 2.34e+01 b.34.13.3 132995 2f60K 64 2.34e+01 1xn9A 101 2.57e+01 d.12.1.3 115578 1semA 58 2.63e+01 1ckaA b.34.2.1 24544 1l1oC 181 2.71e+01 b.40.4.3 73480 2dwcA 433 2.75e+01 2ch4A 320 2.78e+01 b.40.7.1,d.122.1.3 130447,130448 1v9jA 113 2.80e+01 d.52.6.1 100542 3c0cA 73 2.84e+01 1zlmA 58 2.89e+01 1o63A 219 2.93e+01 c.94.1.1 92540 1qtnB 95 3.01e+01 1pauB 1zd9A 188 3.03e+01 c.37.1.8 124938 1ckaA 57 3.03e+01 1ckaA b.34.2.1 24459 2pzeA 229 3.06e+01 2c2hA 192 3.10e+01 c.37.1.8 129668 1accA 735 3.13e+01 f.11.1.1 43828 1acc 735 3.14e+01 1acc 1wv8A 73 3.14e+01 d.304.1.1 121326 1waaA 93 3.21e+01 2da7A 71 3.28e+01 1qwoA 442 3.37e+01 c.60.1.2 104620 1hurA 180 3.44e+01 1hurA c.37.1.8 32052 1kjwA 295 3.51e+01 b.34.2.1,c.37.1.1 68643,68644 2o5hA 136 3.51e+01 1nykA 165 3.51e+01 b.33.1.1 86408 2bkdN 134 3.64e+01 1i8dA 213 3.65e+01 b.43.4.3,b.43.4.3 61953,61954 2bgxA 261 3.68e+01 a.20.1.1,d.118.1.1 128504,128505 1z8gA 372 3.70e+01 b.47.1.2,d.170.1.2 124697,124698 1bkbA 136 3.73e+01 b.34.5.2,b.40.4.5 24609,25341 2r99A 173 3.84e+01 1ezvB 352 3.90e+01 1ezvB d.185.1.1,d.185.1.1 59543,59544 2bu3A 254 3.96e+01 d.3.1.14 129167 1aohA 147 4.02e+01 1aohA b.2.2.2 22401 1gwyA 175 4.05e+01 b.97.1.1 83356 1c28A 135 4.06e+01 1c28A b.22.1.1 23857 2nptB 100 4.06e+01 d.15.2.2 138449 1bkb 136 4.17e+01 1bkb 1xuvA 178 4.20e+01 d.129.3.5 116069 2vsmB 140 4.38e+01 2bl5A 140 4.41e+01 d.51.1.1 128728 2ftsA 419 4.42e+01 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1nhp 447 4.47e+01 1nhp 1nhpA 447 4.48e+01 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1f8fA 371 4.48e+01 b.35.1.2,c.2.1.1 83246,83247 1szoA 257 4.49e+01 c.14.1.3 106164 1roaA 122 4.50e+01 d.17.1.2 105024 1o8uA 257 4.50e+01 c.14.1.3 81194 1cr5A 189 4.51e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 2o9sA 67 4.51e+01 1kb9B 352 4.57e+01 d.185.1.1,d.185.1.1 77313,77314 2r6vA 191 4.59e+01 1aonO 97 4.62e+01 b.35.1.1 24642 2hqxA 246 4.63e+01 b.34.9.1 136675 2fywA 267 4.65e+01 c.135.1.1 134408 2pa8L 92 4.74e+01 1kolA 398 4.81e+01 b.35.1.2,c.2.1.1 77474,77475 1n27A 96 4.82e+01 b.34.9.2 91549 2v94A 107 4.83e+01 2e3nA 255 4.86e+01 2obbA 142 4.86e+01 1g7oA 215 5.09e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 2oseA 234 5.20e+01 1c3hA 137 5.39e+01 b.22.1.1 90405 1wv3A 238 5.41e+01 b.26.1.4,b.26.1.4 121318,121319 1wgoA 123 5.41e+01 b.1.3.1 114618 1at3A 247 5.42e+01 1at3A b.57.1.1 27021 2bz8A 58 5.49e+01 2rmcA 182 5.56e+01 2cpl b.62.1.1 27491 2cu1A 103 5.63e+01 d.15.2.2 130802 2qjlA 99 5.65e+01 2j01Z 206 5.66e+01 1te0A 318 5.74e+01 b.36.1.4,b.47.1.1 112400,112401 1t5bA 201 5.76e+01 c.23.5.3 106433 1o7sA 127 5.78e+01 b.1.1.1 86644 3cx5B 352 5.85e+01 1viuA 203 6.06e+01 d.113.1.1 100771 1fuxA 166 6.16e+01 1fjjA b.17.1.2 60034 1avaC 181 6.19e+01 1avaC b.42.4.1 25604 1qwdA 177 6.19e+01 b.60.1.1 96471 1o3yA 166 6.26e+01 c.37.1.8 86618 1ve1A 304 6.28e+01 c.79.1.1 120007 2j3xA 431 6.31e+01 2iwvA 281 6.35e+01 1jhfA 202 6.49e+01 a.4.5.2,b.87.1.1 63057,63058 1ppjD 241 6.58e+01 a.3.1.3,f.23.11.1 104258,104259 2o31A 67 6.63e+01 2g82A 331 6.65e+01 c.2.1.3,d.81.1.1 134746,134747 1w4vA 119 6.67e+01 2iwrA 178 6.78e+01 1fmtA 314 6.81e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2qr4A 587 6.82e+01 2o6lA 170 6.87e+01 2eifA 136 6.88e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1p9oA 313 6.96e+01 c.72.3.1 94397 2acoA 173 6.98e+01 2jn9A 105 7.06e+01 2yrvA 117 7.09e+01 1f2rI 100 7.14e+01 1c9fA d.15.2.1 37641 2bzsA 236 7.22e+01 c.23.5.3 129560 1weoA 93 7.24e+01 g.44.1.1 114561 2bsjA 133 7.36e+01 2hq9A 149 7.54e+01 b.45.1.1 136659 2gfaA 119 7.61e+01 b.34.9.1,b.34.9.1 135089,135090 1bb9A 115 7.69e+01 b.34.2.1 24554 1sv6A 269 7.73e+01 d.177.1.1 106043 1qoiA 177 7.84e+01 2cpl b.62.1.1 27490 1q3lA 69 7.92e+01 b.34.13.2 111652 1of5A 221 7.95e+01 d.17.4.2 86933