# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	1.202		
1mhnA	59	3.374	b.34.9.1	84964
1wgsA	133	5.192	b.34.13.3	114622
1g5vA	88	5.677	b.34.9.1	60292
2f5kA	102	10.03	b.34.13.3	132995
1rkiA	102	14.70	d.308.1.2	118776
1zc1A	208	16.33		
2dkoB	103	16.84		
2gfaA	119	18.37	b.34.9.1,b.34.9.1	135089,135090
2hqxA	246	20.54	b.34.9.1	136675
1ris	101	24.29		
1sk4A	163	24.55	d.118.1.1	105664
1lp3A	519	25.17	b.121.5.2	74169
1nmeB	92	26.63		
1qtnB	95	28.83		
2psoA	237	30.42		
2j5aA	110	31.33		
1louA	101	31.74	d.58.14.1	39323
2gf6A	135	34.29	d.38.1.1	135077
2eryA	172	38.69	c.37.1.8	132306
2r55A	231	41.74		
1vqoK	132	44.69	b.39.1.1	120372
1yoaA	159	45.13	b.45.1.2	123775
2av9A	147	45.96	d.38.1.1	127365
1r61A	207	49.49	c.8.8.1	97138
1o6gA	710	53.90	b.69.7.1,c.69.1.4	81087,81088
2bkdN	134	55.09		
1ehsA	48	55.83	g.2.1.1	43998
2dt5A	211	58.10	a.4.5.38,c.2.1.12	131708,131709
1fdrA	248	58.36	b.43.4.2,c.25.1.1	25653,31543
1x24A	180	58.53		
1ecxA	384	58.94	c.67.1.3	34431
2qckA	167	58.95		
2fhdA	153	59.34		
1jdpA	441	62.46	c.93.1.1	62906
2zdiC	151	67.40		
1sur	215	69.17		
2gq1A	332	69.75		
1fsiA	189	72.30	d.61.1.1	39536
1nmsA	249	73.50	c.17.1.1	85879
1s6yA	450	73.89	c.2.1.5,d.162.1.2	105314,105315
1jfxA	217	74.18	c.1.8.8	62943
2nujA	163	76.07	d.38.1.1	138608
2yrvA	117	78.61		
1vqoA	240	79.23	b.34.5.3,b.40.4.5	120361,120362
1c4rA	182	82.73	b.29.1.4	24229
1vqoB	338	87.93	b.43.3.2	120363