# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	1.010		
1mhnA	59	4.247	b.34.9.1	84964
1g5vA	88	5.385	b.34.9.1	60292
1wgsA	133	5.791	b.34.13.3	114622
2f5kA	102	11.70	b.34.13.3	132995
1zc1A	208	13.59		
2gfaA	119	14.93	b.34.9.1,b.34.9.1	135089,135090
1rkiA	102	16.25	d.308.1.2	118776
2hqxA	246	19.53	b.34.9.1	136675
1yoaA	159	24.19	b.45.1.2	123775
2dkoB	103	26.35		
2eryA	172	26.67	c.37.1.8	132306
2j5aA	110	26.71		
2bkdN	134	29.77		
1nmeB	92	31.50		
1vqoK	132	33.03	b.39.1.1	120372
1qtnB	95	33.20		
2qckA	167	33.33		
1louA	101	34.89	d.58.14.1	39323
1fsiA	189	37.08	d.61.1.1	39536
2p0pA	126	38.00		
1ris	101	38.39		
1jdpA	441	41.07	c.93.1.1	62906
1fdrA	248	41.55	b.43.4.2,c.25.1.1	25653,31543
1o6gA	710	44.45	b.69.7.1,c.69.1.4	81087,81088
2gf6A	135	49.26	d.38.1.1	135077
1x24A	180	50.89		
2fhdA	153	53.38		
2psoA	237	54.81		
2btlA	134	55.02	b.148.1.1	129154
1lp3A	519	55.17	b.121.5.2	74169
2av9A	147	56.17	d.38.1.1	127365
1ecxA	384	57.50	c.67.1.3	34431
1kbvA	327	58.91	b.6.1.3,b.6.1.3	68395,68396
1vqoA	240	59.71	b.34.5.3,b.40.4.5	120361,120362
2r55A	231	62.01		
2zdiC	151	62.84		
1ehsA	48	66.68	g.2.1.1	43998
1s6yA	450	69.39	c.2.1.5,d.162.1.2	105314,105315
8abpA	306	69.40	c.93.1.1	35647
2yrvA	117	70.34		
2dt5A	211	71.21	a.4.5.38,c.2.1.12	131708,131709
1l1jA	239	79.06	b.47.1.1	84516
1obbA	480	83.62	c.2.1.5,d.162.1.2	86760,86761
2fb2A	340	84.28		
1i8dA	213	85.17	b.43.4.3,b.43.4.3	61953,61954
1xcbA	211	86.34	a.4.5.38,c.2.1.12	109552,109553