# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 0.3572 1mhnA 59 1.239 b.34.9.1 84964 2f5kA 102 1.621 b.34.13.3 132995 1g5vA 88 1.636 b.34.9.1 60292 1wgsA 133 1.674 b.34.13.3 114622 2gfaA 119 3.404 b.34.9.1,b.34.9.1 135089,135090 1fdrA 248 4.387 b.43.4.2,c.25.1.1 25653,31543 2j5aA 110 5.659 2psoA 237 7.673 2bkdN 134 8.719 1r61A 207 9.209 c.8.8.1 97138 1j0hA 588 9.720 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1jdpA 441 10.04 c.93.1.1 62906 1yoaA 159 10.64 b.45.1.2 123775 1vc3B 97 10.76 1c4rA 182 11.15 b.29.1.4 24229 1lcyA 325 11.25 b.36.1.4,b.47.1.1 73834,73835 1vqoA 240 11.50 b.34.5.3,b.40.4.5 120361,120362 7taa 478 12.68 1vqoK 132 12.94 b.39.1.1 120372 1rkiA 102 13.03 d.308.1.2 118776 2qckA 167 13.21 2dkoB 103 14.23 2av9A 147 14.23 d.38.1.1 127365 1qtnB 95 14.42 1griA 217 14.99 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1nmeB 92 15.27 1ris 101 15.37 1louA 101 15.41 d.58.14.1 39323 1z85A 234 15.54 1h3gA 601 16.46 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1l1jA 239 16.54 b.47.1.1 84516 1zc1A 208 17.39 2fhdA 153 18.21 1kbvA 327 18.52 b.6.1.3,b.6.1.3 68395,68396 2p0pA 126 20.48 2zdiC 151 22.65 1cr5A 189 22.70 b.52.2.3,d.31.1.1 26931,38465 1g8lA 411 24.58 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 3bzcA 785 25.15 2fb2A 340 25.20 1i8dA 213 25.65 b.43.4.3,b.43.4.3 61953,61954 1y8tA 324 25.90 b.36.1.4,b.47.1.1 122763,122764 1wi5A 119 25.91 b.40.4.5 114661 1r7aA 504 26.99 b.71.1.1,c.1.8.1 97192,97193 1x24A 180 27.01 2hqxA 246 27.74 b.34.9.1 136675 3c2qA 345 28.00 3cb0A 173 28.12 1vhyA 257 28.70 b.122.1.2,c.116.1.5 100714,100715 2yrvA 117 28.92 2d5mA 190 30.45 1at0 145 31.29 2hc8A 113 31.64 1jj2A 239 31.86 b.34.5.3,b.40.4.5 63084,63085 2r55A 231 31.95 1jj2P 95 32.05 b.34.5.1 63101 2egvA 229 32.05 1p0yA 444 32.22 a.166.1.1,b.85.7.3 87654,87655 1kzlA 208 32.77 b.43.4.3,b.43.4.3 77635,77636 1g8kA 825 33.56 b.52.2.2,c.81.1.1 26920,35328 1h30A 422 33.97 b.29.1.4,b.29.1.4 76604,76605 1dq3A 454 34.26 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2h21A 440 36.06 a.166.1.1,b.85.7.3 135976,135977 1ep2B 261 36.21 b.43.4.2,c.25.1.3 25666,31556 1he7A 126 37.42 b.1.1.4 60970 2evrA 246 38.45 b.34.11.3,d.3.1.16 132440,132441 2hufA 393 38.46 1sur 215 39.90 1ji2A 585 39.92 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2r3uA 211 39.94 1b8oA 284 40.42 c.56.2.1 33762 1ep3B 262 40.47 b.43.4.2,c.25.1.3 25664,31554 1fdr 248 41.11 1v6zA 228 41.41 b.122.1.2,c.116.1.5 113551,113552 1krhA 338 42.33 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1y9lA 115 42.46 1bb9 115 42.94 1fnoA 417 43.17 d.58.19.1,c.56.5.4 70145,75841 1agjA 242 43.84 b.47.1.1 25827 1wchA 315 44.23 c.45.1.2 114508 1jhfA 202 44.32 a.4.5.2,b.87.1.1 63057,63058 2bgiA 272 44.36 2hbaA 52 46.07 1rl2A 137 46.28 b.34.5.3,b.40.4.5 24610,25342 1at0A 145 46.90 b.86.1.1 28374 1nmsA 249 47.06 c.17.1.1 85879 1vk6A 269 47.06 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1cqmA 101 47.07 d.58.14.1 39321 1n7oA 721 47.70 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1vmbA 140 49.09 d.58.14.1 113672 3b3qE 197 49.33 1sk4A 163 49.41 d.118.1.1 105664 2nujA 163 50.45 d.38.1.1 138608 1tplA 426 50.62 c.67.1.2 34387 1qs8A 329 51.77 b.50.1.2 26887 2jmzA 186 51.80 1se8A 301 52.25 b.40.4.3 105448 1i1wA 303 52.41 c.1.8.3 76732 2hbwA 235 52.42 1w5rA 278 52.43 d.3.1.5 120643 2rdeA 251 52.67 1tu5A 746 53.05 2bjrA 368 53.56 b.169.1.1,b.169.1.1 128628,128629 1ryaA 160 54.00 d.113.1.5 105122 1z94A 147 54.05 d.129.3.5 124740 1d2oA 187 54.69 b.3.5.1,b.3.5.1 22625,22626 1v8hA 107 57.57 b.1.18.19 119870 1mi8A 158 57.59 b.86.1.2 91279 5gcnA 166 57.61 d.108.1.1 40807 1a12A 413 59.97 b.69.5.1 27663 1sc3B 88 60.57 2in0A 139 61.20 1ppjE 196 61.85 b.33.1.1,f.23.12.1 104260,104261 1sotA 320 63.90 b.36.1.4,b.47.1.1 105852,105853 1xcbA 211 63.93 a.4.5.38,c.2.1.12 109552,109553 3cddA 361 65.33 2opkA 112 66.01 1rxyA 253 66.90 c.56.2.1 98065 2arhA 203 67.22 d.108.1.9 127197 2a90A 240 67.23 1n7zA 334 67.28 b.127.1.1 85380 1pk6A 133 68.14 b.22.1.1 94801 1ce4A 35 68.39 j.53.1.1 46337 1ybdA 239 69.09 c.73.1.3 122884 1mc3A 296 69.28 c.68.1.6 78943 3cngA 189 70.32 1zv9A 172 70.50 b.2.2.2 125700 1gr3A 160 70.60 b.22.1.1 65476 1te0A 318 71.22 b.36.1.4,b.47.1.1 112400,112401 2pbnA 313 71.67 1pyoB 105 73.80 1surA 215 74.00 c.26.2.2 31620 2gf6A 135 74.30 d.38.1.1 135077 3c5tA 122 74.89 1ypfA 336 76.02 1vqoQ 96 76.08 b.34.5.1 120378 1k0wA 231 77.35 c.74.1.1 77220 1fsiA 189 77.74 d.61.1.1 39536 1qhvA 195 78.61 b.21.1.1 23842 2gw4B 162 78.72 1qx4A 274 79.12 b.43.4.2,c.25.1.1 104624,104625 1g8jA 825 79.99 b.52.2.2,c.81.1.1 26924,35332 1uz5A 402 80.36 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1nykA 165 80.40 b.33.1.1 86408 1qppA 218 80.40 b.1.11.1,b.7.2.1 22320,23202 1gvhA 396 80.55 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2rh0A 157 81.10 1kjwA 295 81.46 b.34.2.1,c.37.1.1 68643,68644 2qngA 199 82.19 1gpc 218 82.89 2oqeA 660 84.09 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1fieA 731 84.16 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21879,22167,22168,37109 1khcA 147 84.19 b.34.9.2 68608 2p0oA 372 84.43 1q46A 175 84.74 a.60.14.1,b.40.4.5 111594,111595 2avwA 311 85.85 2dbjA 124 85.88 2qjlA 99 86.04 2qf4A 172 86.17 2bjqA 345 87.25 b.169.1.1,b.169.1.1 128626,128627 1jdiA 231 87.57 c.74.1.1 66551 2ofzA 138 87.67 1qpaA 345 88.42 a.93.1.1 18585 1x89A 178 88.58 b.60.1.1 121799 1o6gA 710 88.64 b.69.7.1,c.69.1.4 81087,81088 1xwwA 157 89.28 1r94A 118 89.33 b.124.1.1 97251 1ecxA 384 89.70 c.67.1.3 34431