# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	1.920		
1mhnA	59	5.576	b.34.9.1	84964
1g5vA	88	7.509	b.34.9.1	60292
2f5kA	102	8.697	b.34.13.3	132995
1wgsA	133	10.13	b.34.13.3	114622
2dkoB	103	14.48		
1qtnB	95	15.11		
2j5aA	110	15.32		
1nmeB	92	16.82		
1lp3A	519	23.17	b.121.5.2	74169
1ris	101	25.40		
2gfaA	119	26.48	b.34.9.1,b.34.9.1	135089,135090
1louA	101	26.61	d.58.14.1	39323
2eryA	172	27.77	c.37.1.8	132306
1rkiA	102	29.88	d.308.1.2	118776
2psoA	237	33.86		
1w5rA	278	39.73	d.3.1.5	120643
1vqoB	338	43.21	b.43.3.2	120363
1kbvA	327	44.61	b.6.1.3,b.6.1.3	68395,68396
2hqxA	246	45.87	b.34.9.1	136675
1ehsA	48	46.12	g.2.1.1	43998
1zc1A	208	46.70		
1sc3B	88	50.90		
1x24A	180	52.43		
1o6gA	710	53.47	b.69.7.1,c.69.1.4	81087,81088
1vc3B	97	53.49		
1yoaA	159	54.46	b.45.1.2	123775
1nmsA	249	54.62	c.17.1.1	85879
2r55A	231	54.87		
1pyoB	105	55.88		
1ecxA	384	58.06	c.67.1.3	34431
2zdiC	151	58.20		
1jdpA	441	58.60	c.93.1.1	62906
2av9A	147	59.25	d.38.1.1	127365
2gf6A	135	65.07	d.38.1.1	135077
2cas	548	65.16		
1vqoK	132	66.22	b.39.1.1	120372
2fhdA	153	67.76		
2nujA	163	75.60	d.38.1.1	138608
2a1hA	365	76.01	e.17.1.1	125997
2bkdN	134	81.16		
1y9uA	323	83.75	c.94.1.1	116594
1eg5A	384	85.15	c.67.1.3	34429
1r61A	207	86.41	c.8.8.1	97138
2qckA	167	86.44		
1y9lA	115	86.69		
1griA	217	87.20	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1r94A	118	88.85	b.124.1.1	97251
4dpvZ	584	89.22	b.121.5.2	23377