# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	3.561		
1mhnA	59	14.18	b.34.9.1	84964
1wgsA	133	15.44	b.34.13.3	114622
2f5kA	102	17.80	b.34.13.3	132995
2dkoB	103	20.42		
1lp3A	519	22.16	b.121.5.2	74169
1qtnB	95	24.96		
1g5vA	88	25.35	b.34.9.1	60292
1nmeB	92	28.05		
2j5aA	110	31.57		
2eryA	172	34.48	c.37.1.8	132306
1ris	101	34.58		
1louA	101	35.83	d.58.14.1	39323
2r55A	231	38.15		
1rkiA	102	39.68	d.308.1.2	118776
2gfaA	119	44.65	b.34.9.1,b.34.9.1	135089,135090
1w5rA	278	45.64	d.3.1.5	120643
1ehsA	48	46.43	g.2.1.1	43998
1zc1A	208	51.88		
2av9A	147	52.67	d.38.1.1	127365
2psoA	237	56.31		
2fhdA	153	62.74		
1yoaA	159	63.01	b.45.1.2	123775
2fp3A	316	68.94		
1x24A	180	69.31		
2zdiC	151	70.96		
2cas	548	71.70		
1kbvA	327	71.74	b.6.1.3,b.6.1.3	68395,68396
1ecxA	384	74.68	c.67.1.3	34431
1vqoB	338	77.38	b.43.3.2	120363
1o6gA	710	79.11	b.69.7.1,c.69.1.4	81087,81088
1sc3B	88	83.19		
1nmsA	249	84.58	c.17.1.1	85879
1jdpA	441	84.82	c.93.1.1	62906
2gf6A	135	86.96	d.38.1.1	135077