# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	2.317		
1mhnA	59	7.931	b.34.9.1	84964
1g5vA	88	10.81	b.34.9.1	60292
1wgsA	133	11.18	b.34.13.3	114622
1lp3A	519	13.29	b.121.5.2	74169
2f5kA	102	14.17	b.34.13.3	132995
2dkoB	103	20.76		
1qtnB	95	24.72		
2r55A	231	26.47		
2j5aA	110	26.58		
1nmeB	92	27.71		
1w5rA	278	31.45	d.3.1.5	120643
1jdpA	441	32.39	c.93.1.1	62906
2gfaA	119	32.42	b.34.9.1,b.34.9.1	135089,135090
1louA	101	33.87	d.58.14.1	39323
1rkiA	102	34.01	d.308.1.2	118776
2psoA	237	35.27		
1ris	101	36.52		
2cas	548	39.88		
2hqxA	246	42.52	b.34.9.1	136675
1yoaA	159	43.21	b.45.1.2	123775
2av9A	147	44.15	d.38.1.1	127365
2fhdA	153	44.40		
1vqoB	338	46.42	b.43.3.2	120363
1zc1A	208	50.93		
2eryA	172	51.94	c.37.1.8	132306
1o6gA	710	53.36	b.69.7.1,c.69.1.4	81087,81088
4dpvZ	584	59.32	b.121.5.2	23377
1vqoK	132	59.36	b.39.1.1	120372
1ehsA	48	60.38	g.2.1.1	43998
2qckA	167	62.52		
1ecxA	384	66.11	c.67.1.3	34431
2zdiC	151	66.37		
1c4rA	182	77.08	b.29.1.4	24229
2gf6A	135	77.54	d.38.1.1	135077
1fdrA	248	78.23	b.43.4.2,c.25.1.1	25653,31543
1lybB	241	81.33		
1r61A	207	84.90	c.8.8.1	97138
1kbvA	327	88.18	b.6.1.3,b.6.1.3	68395,68396
1x24A	180	89.13