# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wgsA	133	11.22	b.34.13.3	114622
1mhnA	59	15.62	b.34.9.1	84964
2bkdN	134	17.13		
1yoaA	159	20.76	b.45.1.2	123775
1g5vA	88	21.40	b.34.9.1	60292
2qqrA	118	22.61		
2dkoB	103	23.46		
2f5kA	102	23.95	b.34.13.3	132995
2eryA	172	27.97	c.37.1.8	132306
2qckA	167	29.13		
2b6hA	192	37.55	c.37.1.8	127994
1nmeB	92	42.65		
1nmsA	249	49.71	c.17.1.1	85879
2fp3A	316	53.76		
2a5dA	175	54.27	c.37.1.8	126172
1zj6A	187	57.36	c.37.1.8	125145
2av9A	147	60.22	d.38.1.1	127365
1qtnB	95	60.54		
2nzhA	113	64.87		
2gfaA	119	65.31	b.34.9.1,b.34.9.1	135089,135090
2eqkA	85	72.48		
2jn9A	105	72.82		
1cp3A	277	76.29	c.17.1.1	30992
1zd9A	188	83.02	c.37.1.8	124938
2q2iA	116	86.29