# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	2.125		
1mhnA	59	3.501	b.34.9.1	84964
1g5vA	88	5.062	b.34.9.1	60292
1wgsA	133	6.661	b.34.13.3	114622
2f5kA	102	7.791	b.34.13.3	132995
1lp3A	519	16.15	b.121.5.2	74169
2r55A	231	16.67		
2psoA	237	18.02		
2j5aA	110	18.99		
2dkoB	103	19.13		
2gfaA	119	20.02	b.34.9.1,b.34.9.1	135089,135090
1o6gA	710	22.51	b.69.7.1,c.69.1.4	81087,81088
1nmeB	92	24.24		
1qtnB	95	26.33		
2av9A	147	27.25	d.38.1.1	127365
1ris	101	29.50		
1zc1A	208	36.91		
1jdpA	441	37.61	c.93.1.1	62906
1vqoK	132	39.89	b.39.1.1	120372
2zdiC	151	40.90		
1louA	101	41.74	d.58.14.1	39323
1jfxA	217	43.20	c.1.8.8	62943
2btlA	134	48.69	b.148.1.1	129154
2hqxA	246	49.21	b.34.9.1	136675
1x24A	180	50.24		
1yoaA	159	50.55	b.45.1.2	123775
1ehsA	48	53.61	g.2.1.1	43998
1ecxA	384	56.43	c.67.1.3	34431
2gf6A	135	56.61	d.38.1.1	135077
1bngA	110	57.75	d.1.1.2	36184
1fsiA	189	58.11	d.61.1.1	39536
1rkiA	102	59.27	d.308.1.2	118776
2qckA	167	61.08		
1y9uA	323	64.37	c.94.1.1	116594
1nmsA	249	65.99	c.17.1.1	85879
1kbvA	327	69.68	b.6.1.3,b.6.1.3	68395,68396
1sk4A	163	69.88	d.118.1.1	105664
1vqoB	338	70.22	b.43.3.2	120363
1jj2P	95	71.13	b.34.5.1	63101
2bkdN	134	72.26		
1sur	215	72.40		
1vc3B	97	72.65		
2ofzA	138	75.96		
1obbA	480	76.50	c.2.1.5,d.162.1.2	86760,86761
2fhdA	153	78.74		
1h30A	422	78.99	b.29.1.4,b.29.1.4	76604,76605
2a1hA	365	79.21	e.17.1.1	125997
2eryA	172	82.12	c.37.1.8	132306
2cas	548	82.87		
2j01E	206	83.50		
1s6yA	450	88.96	c.2.1.5,d.162.1.2	105314,105315