# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1o6gA 710 3.336 b.69.7.1,c.69.1.4 81087,81088 3c2uA 538 3.678 1suuA 312 3.869 b.68.10.1 99006 1uasA 362 4.190 b.71.1.1,c.1.8.1 88388,88389 4dpvZ 584 4.244 b.121.5.2 23377 2qqrA 118 4.576 1c8gA 548 5.423 b.121.5.2 23380 1crkA 380 5.498 a.83.1.1,d.128.1.2 18458,41193 1x8qA 184 9.815 b.60.1.1 114966 1mhnA 59 10.20 b.34.9.1 84964 1g5vA 88 10.97 b.34.9.1 60292 1oi1A 221 11.64 b.34.9.3,b.34.9.3 87037,87038 1pc3A 350 13.41 c.94.1.1 104102 1qxoA 388 14.41 d.258.1.1 96539 2vovA 336 14.62 1ms9A 648 14.96 b.29.1.15,b.68.1.1 85088,85089 1e6pA 499 15.53 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1cxlA 686 16.35 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 2nsmA 439 18.41 2r0lA 248 18.82 2yw2A 424 18.93 1sy3A 184 19.26 b.60.1.1 106110 1nmsA 249 19.29 c.17.1.1 85879 2f5kA 102 20.19 b.34.13.3 132995 1wc2A 181 21.12 2gfaA 119 21.58 b.34.9.1,b.34.9.1 135089,135090 1hkbA 917 22.21 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1wgsA 133 22.69 b.34.13.3 114622 1umpA 631 25.47 a.102.4.2,a.102.4.2 99619,99620 1y9uA 323 25.86 c.94.1.1 116594 2j04B 524 27.15 2a6hC 1119 27.28 e.29.1.1 126264 1vf8A 377 28.60 c.1.8.5,d.26.3.1 120029,120030 1hkkA 364 29.36 c.1.8.5,d.26.3.1 90634,90635 1qtnB 95 30.12 2z3yA 662 31.26 8fabB 224 31.90 b.1.1.1,b.1.1.2 19773,20883 1pg4A 652 33.94 e.23.1.1 88067 2vgaA 207 34.01 1eexB 224 34.73 c.51.3.1 33213 1cp3A 277 34.80 c.17.1.1 30992 1pk6A 133 34.80 b.22.1.1 94801 1yifA 533 36.16 b.29.1.23,b.67.2.1 123283,123284 2gq1A 332 37.15 2hqxA 246 37.43 b.34.9.1 136675 1h09A 338 37.95 b.109.1.1,c.1.8.8 83420,83421 1fdrA 248 39.16 b.43.4.2,c.25.1.1 25653,31543 2rdeA 251 40.74 1vc3B 97 41.41 1q1lA 401 43.89 d.258.1.1 95591 1fs5A 266 44.68 c.124.1.1 65044 1ti6A 875 45.48 b.52.2.2,c.81.1.1 106974,106975 2dkhA 639 46.19 1q7fA 286 48.01 b.68.9.1 96036 1vdzA 588 48.89 1n6eA 1071 49.51 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2fhdA 153 49.64 1ed8A 449 51.73 c.76.1.1 34988 1ur4A 399 54.98 c.1.8.3 113402 1od2A 805 55.15 c.14.1.4,c.14.1.4 86821,86822 1ynfA 458 55.71 d.126.1.7 123723 1vns 609 55.98 3b2mA 295 57.00 2reeA 224 59.19 1b8jA 449 60.41 c.76.1.1 34992 1x7dA 350 62.25 c.2.1.13 114927 1kbvA 327 63.48 b.6.1.3,b.6.1.3 68395,68396 2i5nL 273 64.75 f.26.1.1 137066 1lg2A 365 64.91 c.1.8.5,d.26.3.1 77950,77951 1ris 101 65.75 1s96A 219 66.04 c.37.1.1 98740 1xezA 721 67.89 1d3gA 367 68.36 c.1.4.1 28600 3b3qE 197 68.57 1t3cA 421 69.25 d.92.1.7 106343 2bgiA 272 69.83 1zc1A 208 71.96 1nmeB 92 72.00 2q8xA 331 73.05 1ed5A 444 73.60 d.174.1.1 42530 2cas 548 75.03 2cjaA 522 75.73 1o7fA 469 76.95 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1fsiA 189 77.50 d.61.1.1 39536 2qmqA 286 78.81 1rkiA 102 78.86 d.308.1.2 118776 1f1xA 322 79.33 d.32.1.3,d.32.1.3 83208,83209 1hl9A 449 79.38 b.71.1.3,c.1.8.11 90650,90651 1k8tA 510 79.80 e.41.1.1 68316 2as0A 396 83.27 b.122.1.9,c.66.1.51 127227,127228 1n1tA 641 84.28 b.29.1.15,b.68.1.1 79821,79822 2gw4B 162 84.33 1se8A 301 85.09 b.40.4.3 105448 1louA 101 85.25 d.58.14.1 39323 1lybB 241 85.45 1a12A 413 85.93 b.69.5.1 27663 2q83A 346 86.14 2gl6A 392 87.19 2o04A 399 87.28 2fb2A 340 88.34 2pi6A 361 88.41 1yoaA 159 88.87 b.45.1.2 123775 1d5rA 324 89.11 b.7.1.1,c.45.1.1 23181,32697 1f1uA 323 89.78 d.32.1.3,d.32.1.3 83200,83201