# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	1.166		
1mhnA	59	3.385	b.34.9.1	84964
1wgsA	133	5.625	b.34.13.3	114622
1g5vA	88	5.774	b.34.9.1	60292
2f5kA	102	6.882	b.34.13.3	132995
2gfaA	119	14.02	b.34.9.1,b.34.9.1	135089,135090
1lp3A	519	16.19	b.121.5.2	74169
1zc1A	208	19.46		
2j5aA	110	20.10		
1rkiA	102	21.62	d.308.1.2	118776
1yoaA	159	23.01	b.45.1.2	123775
2dkoB	103	23.19		
2av9A	147	23.58	d.38.1.1	127365
1nmeB	92	25.06		
2gf6A	135	26.59	d.38.1.1	135077
1jfxA	217	28.83	c.1.8.8	62943
2btlA	134	29.78	b.148.1.1	129154
2hqxA	246	29.84	b.34.9.1	136675
2qckA	167	32.87		
2psoA	237	34.98		
1qtnB	95	35.23		
1x24A	180	35.93		
1ris	101	36.55		
2ofzA	138	43.75		
1louA	101	44.13	d.58.14.1	39323
1vqoK	132	45.16	b.39.1.1	120372
1jdpA	441	46.05	c.93.1.1	62906
1o6gA	710	46.82	b.69.7.1,c.69.1.4	81087,81088
2fhdA	153	47.68		
1c4rA	182	49.50	b.29.1.4	24229
1bngA	110	49.87	d.1.1.2	36184
1fsiA	189	50.28	d.61.1.1	39536
2eryA	172	51.20	c.37.1.8	132306
2zdiC	151	54.15		
2hljA	157	63.68	d.38.1.1	136570
1fdrA	248	67.06	b.43.4.2,c.25.1.1	25653,31543
1ehsA	48	67.88	g.2.1.1	43998
1ecxA	384	69.16	c.67.1.3	34431
2nujA	163	70.92	d.38.1.1	138608
1jj2P	95	74.33	b.34.5.1	63101
1nmsA	249	75.10	c.17.1.1	85879
1h30A	422	77.81	b.29.1.4,b.29.1.4	76604,76605
2r55A	231	79.33		
1s96A	219	79.36	c.37.1.1	98740
2dt5A	211	79.39	a.4.5.38,c.2.1.12	131708,131709
1obbA	480	79.41	c.2.1.5,d.162.1.2	86760,86761
1griA	217	79.63	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1s6yA	450	80.10	c.2.1.5,d.162.1.2	105314,105315
1kjwA	295	82.85	b.34.2.1,c.37.1.1	68643,68644
1sk4A	163	83.21	d.118.1.1	105664
1kbvA	327	85.74	b.6.1.3,b.6.1.3	68395,68396
1sur	215	85.97		
1b2zA	110	88.34	d.1.1.2	36216