# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	3.584		
1mhnA	59	12.97	b.34.9.1	84964
1wgsA	133	15.68	b.34.13.3	114622
1g5vA	88	16.27	b.34.9.1	60292
1lp3A	519	21.38	b.121.5.2	74169
2f5kA	102	23.09	b.34.13.3	132995
2dkoB	103	30.65		
1zc1A	208	35.64		
2cas	548	36.57		
2j5aA	110	38.29		
1rkiA	102	38.64	d.308.1.2	118776
1jdpA	441	39.93	c.93.1.1	62906
2gfaA	119	40.31	b.34.9.1,b.34.9.1	135089,135090
1r61A	207	42.41	c.8.8.1	97138
1nmeB	92	42.68		
2r55A	231	43.03		
2av9A	147	43.63	d.38.1.1	127365
1qtnB	95	45.02		
1ris	101	48.84		
1louA	101	51.73	d.58.14.1	39323
1kbvA	327	52.23	b.6.1.3,b.6.1.3	68395,68396
2psoA	237	54.60		
1ehsA	48	60.12	g.2.1.1	43998
4dpvZ	584	60.16	b.121.5.2	23377
1o6gA	710	64.68	b.69.7.1,c.69.1.4	81087,81088
2qckA	167	67.30		
2fhdA	153	70.05		
2hqxA	246	71.97	b.34.9.1	136675
1fdrA	248	72.97	b.43.4.2,c.25.1.1	25653,31543
2eryA	172	73.69	c.37.1.8	132306
2bgiA	272	74.16		
2gf6A	135	76.64	d.38.1.1	135077
1yoaA	159	82.34	b.45.1.2	123775