# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	2.376		
1wgsA	133	5.405	b.34.13.3	114622
1mhnA	59	7.700	b.34.9.1	84964
2f5kA	102	11.40	b.34.13.3	132995
2j5aA	110	13.14		
1g5vA	88	15.99	b.34.9.1	60292
2dkoB	103	17.72		
1nmeB	92	20.78		
2gfaA	119	21.29	b.34.9.1,b.34.9.1	135089,135090
1qtnB	95	21.84		
2psoA	237	25.84		
1ris	101	26.78		
1zc1A	208	27.49		
1rkiA	102	31.09	d.308.1.2	118776
2zdiC	151	31.23		
1lp3A	519	32.78	b.121.5.2	74169
1louA	101	33.64	d.58.14.1	39323
1ehsA	48	34.98	g.2.1.1	43998
2av9A	147	37.50	d.38.1.1	127365
1jdpA	441	39.05	c.93.1.1	62906
1sk4A	163	42.29	d.118.1.1	105664
2qckA	167	44.54		
1yoaA	159	44.83	b.45.1.2	123775
2cas	548	47.53		
2fb2A	340	50.55		
1x24A	180	57.51		
1r61A	207	58.48	c.8.8.1	97138
1vc3B	97	58.78		
1nmsA	249	59.04	c.17.1.1	85879
2eryA	172	65.87	c.37.1.8	132306
1obbA	480	67.26	c.2.1.5,d.162.1.2	86760,86761
1sc3B	88	68.55		
4dpvZ	584	70.54	b.121.5.2	23377
1w5rA	278	70.92	d.3.1.5	120643
1pyoB	105	71.05		
1kbvA	327	72.39	b.6.1.3,b.6.1.3	68395,68396
1fdrA	248	72.55	b.43.4.2,c.25.1.1	25653,31543
2avwA	311	75.23		
2p0pA	126	75.89		
1wi5A	119	76.31	b.40.4.5	114661
1jj2P	95	77.78	b.34.5.1	63101
1vqoK	132	77.88	b.39.1.1	120372
2a90A	240	85.13		
1vqoA	240	86.65	b.34.5.3,b.40.4.5	120361,120362
2r55A	231	87.31		
2yrvA	117	88.66