# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	3.107		
1g5vA	88	4.977	b.34.9.1	60292
1mhnA	59	5.692	b.34.9.1	84964
2f5kA	102	10.15	b.34.13.3	132995
1wgsA	133	14.27	b.34.13.3	114622
2dkoB	103	14.59		
2j5aA	110	18.20		
1qtnB	95	20.78		
1nmeB	92	20.79		
1zc1A	208	21.19		
2gfaA	119	26.56	b.34.9.1,b.34.9.1	135089,135090
2av9A	147	27.09	d.38.1.1	127365
1rkiA	102	30.13	d.308.1.2	118776
2psoA	237	33.32		
1ris	101	35.92		
1fdrA	248	36.32	b.43.4.2,c.25.1.1	25653,31543
1lp3A	519	39.23	b.121.5.2	74169
1vqoB	338	40.20	b.43.3.2	120363
1louA	101	42.53	d.58.14.1	39323
2r55A	231	42.62		
1ehsA	48	45.70	g.2.1.1	43998
1vqoK	132	47.44	b.39.1.1	120372
1r61A	207	48.51	c.8.8.1	97138
2qckA	167	51.19		
1yoaA	159	51.36	b.45.1.2	123775
1ecxA	384	59.39	c.67.1.3	34431
1nmsA	249	61.01	c.17.1.1	85879
1jdpA	441	61.10	c.93.1.1	62906
2bgiA	272	63.88		
2zdiC	151	65.44		
1jj2P	95	69.69	b.34.5.1	63101
1vc3B	97	71.84		
1sc3B	88	74.13		
1x24A	180	74.18		
1wi5A	119	74.24	b.40.4.5	114661
2eryA	172	74.60	c.37.1.8	132306
1pyoB	105	77.18		
1h30A	422	77.87	b.29.1.4,b.29.1.4	76604,76605
1griA	217	80.49	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
2cas	548	82.16		
1obbA	480	82.53	c.2.1.5,d.162.1.2	86760,86761
2hqxA	246	83.43	b.34.9.1	136675
1fsiA	189	84.44	d.61.1.1	39536