# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dkoB	103	3.915		
1nmsA	249	7.423	c.17.1.1	85879
2eryA	172	11.84	c.37.1.8	132306
1y08A	323	14.99	d.3.1.12	116280
2oj5A	165	17.51		
2r55A	231	19.91		
2b6hA	192	20.54	c.37.1.8	127994
2a5dA	175	23.56	c.37.1.8	126172
1mhnA	59	26.93	b.34.9.1	84964
1jj2P	95	28.30	b.34.5.1	63101
2fp3A	316	28.34		
2qckA	167	30.80		
1cp3A	277	31.12	c.17.1.1	30992
1eonA	245	34.23	c.52.1.2	33238
1ffkN	95	36.39	b.34.5.1	24606
2avwA	311	40.37		
1yoaA	159	40.95	b.45.1.2	123775
2bkdN	134	43.52		
2nujA	163	43.86	d.38.1.1	138608
1k2fA	190	46.08	b.8.1.2	68054
1ybdA	239	46.51	c.73.1.3	122884
2qqrA	118	48.56		
1nmeB	92	49.51		
1rkiA	102	51.09	d.308.1.2	118776
2yv9A	291	57.45		
2qvjA	421	58.25		
3vubA	101	59.38	b.34.6.1	24613
1zj6A	187	60.05	c.37.1.8	125145
1zd9A	188	61.34	c.37.1.8	124938
1s6yA	450	63.09	c.2.1.5,d.162.1.2	105314,105315
1dxrL	273	63.28	f.26.1.1	43431
1qtnB	95	64.06		
2fywA	267	64.74	c.135.1.1	134408
1vqoQ	96	64.79	b.34.5.1	120378
1g5vA	88	65.67	b.34.9.1	60292
1danU	121	68.59	b.1.2.1	21954
1danT	80	68.70	b.1.2.1	21953
2e74A	215	69.08	f.21.1.2	132048
1ptvA	321	71.50	c.45.1.2	32665
1yd9A	193	72.60	c.50.1.2	122976
2guzB	65	74.89		
1aquA	297	75.45	c.37.1.5	31942
2b06A	155	77.20	d.113.1.1	127624
2a1hA	365	77.49	e.17.1.1	125997
1khcA	147	77.55	b.34.9.2	68608
2ar9A	278	77.79		
1lybB	241	79.85		
1eysL	280	83.63	f.26.1.1	43515
2f5kA	102	84.08	b.34.13.3	132995
2j5aA	110	85.53		
2gicA	422	85.82	a.260.1.1	135227
2psoA	237	86.65		
1x24A	180	86.80