# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	7.365	b.34.9.1	60292
1mhnA	59	9.163	b.34.9.1	84964
2j5aA	110	10.50		
2f5kA	102	13.59	b.34.13.3	132995
1ris	101	15.21		
1louA	101	15.90	d.58.14.1	39323
2b6hA	192	22.48	c.37.1.8	127994
2bkdN	134	22.86		
1k2fA	190	24.56	b.8.1.2	68054
2qqrA	118	26.70		
1zd9A	188	27.10	c.37.1.8	124938
1nmsA	249	29.84	c.17.1.1	85879
1rzhL	281	31.30	f.26.1.1	98164
1dxrL	273	32.97	f.26.1.1	43431
2a5dA	175	33.53	c.37.1.8	126172
1r61A	207	41.17	c.8.8.1	97138
6prcL	273	43.39	f.26.1.1	43434
1rzhM	307	45.51	f.26.1.1	98165
1jj2P	95	45.66	b.34.5.1	63101
2i5nL	273	47.58	f.26.1.1	137066
2eryA	172	48.10	c.37.1.8	132306
1eysL	280	48.52	f.26.1.1	43515
1zj6A	187	51.92	c.37.1.8	125145
2eqkA	85	52.80		
1wgsA	133	53.42	b.34.13.3	114622
2nujA	163	62.90	d.38.1.1	138608
1qo2A	241	66.85	c.1.2.1	28533
1cqmA	101	67.19	d.58.14.1	39321
1cp3A	277	68.16	c.17.1.1	30992
2qngA	199	75.69		
2iwaA	266	75.94		
2qjwA	176	80.17		
1x3sA	195	81.76	c.37.1.8	121670
2qckA	167	88.24		
1ffkN	95	89.62	b.34.5.1	24606
1vmbA	140	89.83	d.58.14.1	113672