# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bkdN 134 0.4754 2ckkA 127 0.6749 1kzlA 208 1.969 b.43.4.3,b.43.4.3 77635,77636 2qqrA 118 2.147 1i8dA 213 2.560 b.43.4.3,b.43.4.3 61953,61954 2g3rA 123 2.961 b.34.9.1,b.34.9.1 134570,134571 1wzoA 246 5.607 2f5kA 102 7.471 b.34.13.3 132995 1y14B 171 11.60 b.40.4.5,d.230.1.1 116323,116324 1nkqA 259 11.77 d.177.1.1 103862 1rl2A 137 11.90 b.34.5.3,b.40.4.5 24610,25342 2j5uA 255 12.50 1d0nA 729 13.20 d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 1lckA 175 15.42 b.34.2.1,d.93.1.1 24552,40421 1g8kA 825 15.75 b.52.2.2,c.81.1.1 26920,35328 2gfaA 119 17.39 b.34.9.1,b.34.9.1 135089,135090 2rcfA 91 18.46 2qf4A 172 18.71 2p0kA 212 22.43 2pth 193 22.57 1n4kA 381 22.71 a.118.22.1,b.42.6.1 79992,79993 1b9mA 265 26.19 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2hazA 105 26.36 b.1.2.1 136303 2bivA 243 27.13 b.34.9.3,b.34.9.3 128592,128593 1at0 145 28.58 1khcA 147 28.93 b.34.9.2 68608 1h9jA 145 29.22 b.40.6.2,b.40.6.2 60829,60830 1wfuA 120 31.23 b.1.2.1 114593 1widA 130 31.84 b.142.1.2 114667 1oi1A 221 32.77 b.34.9.3,b.34.9.3 87037,87038 2pthA 193 34.59 c.56.3.1 33793 1am2 199 34.92 1zp7A 206 35.58 2qckA 167 35.89 2eqjA 66 36.37 1abrB 267 38.06 b.42.2.1,b.42.2.1 25563,25564 1bdo 80 38.08 2fhdA 153 38.25 2fcoA 200 39.99 2a19A 175 41.86 2cwpA 112 41.87 2b6hA 192 42.58 c.37.1.8 127994 2c0cA 362 42.88 1pysB 785 44.30 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16299,16300,25311,39310,40779,41455 2qlcA 126 44.74 2ii1A 301 46.24 1h9sA 140 47.34 b.40.6.2,b.40.6.2 60843,60844 1yoaA 159 47.64 b.45.1.2 123775 1l1jA 239 48.13 b.47.1.1 84516 1mr3F 181 48.71 c.37.1.8 79422 1h9mA 145 50.50 b.40.6.2,b.40.6.2 60833,60834 1l1oC 181 50.90 b.40.4.3 73480 1hyoA 421 51.27 b.34.8.1,d.177.1.1 59001,59002 1sawA 225 52.71 d.177.1.1 112050 1xyiA 66 54.00 1sv6A 269 54.08 d.177.1.1 106043 2hqxA 246 55.31 b.34.9.1 136675 3ceyA 474 57.24 1xniA 118 57.24 b.34.9.1,b.34.9.1 115582,115583 1m4jA 142 57.75 d.109.1.2 78602 2h5cA 198 57.79 b.47.1.1 136145 2r58A 265 57.94 2a5dA 175 58.19 c.37.1.8 126172 2i46A 161 58.31 1q46A 175 59.59 a.60.14.1,b.40.4.5 111594,111595 1ywuA 149 63.19 b.45.2.1 124164 1agjA 242 63.49 b.47.1.1 25827 2yyoA 171 64.00 2f1lA 187 64.19 b.41.1.4,b.43.3.4 132780,132781 1fnf 368 65.76 1qcoA 423 67.22 b.34.8.1,d.177.1.1 59021,59022 1ojqA 212 68.05 d.166.1.1 93146 1rzhH 260 68.09 b.41.1.1,f.23.10.1 98162,98163 2ex2A 458 68.83 e.3.1.3 132497 1oz2A 331 69.23 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1ub4A 110 71.26 b.34.6.2 88399 1e3jA 352 73.33 b.35.1.2,c.2.1.1 24765,29781 2eqkA 85 73.87 1i0rA 169 74.30 b.45.1.2 61489 1rznA 205 75.29 c.52.1.28 111981 1g8jA 825 75.50 b.52.2.2,c.81.1.1 26924,35332 1y1oA 203 75.99 c.52.1.28 116345 3cb0A 173 76.93 2r6vA 191 77.20 1yzgA 179 78.63 c.37.1.8 124276 2j3hA 345 79.33 2q18X 293 79.46 1i82A 189 79.53 b.1.9.2 61937 1bdoA 80 79.75 b.84.1.1 28214 2ho9A 167 81.04 1bvp1 349 81.15 1uufA 369 81.74 b.35.1.2,c.2.1.1 100006,100007 1rqpA 299 82.42 b.141.1.1,c.132.1.1 97754,97755 1cskA 71 83.34 b.34.2.1 24513 1qq4A 198 84.12 b.47.1.1 25768 2o8lA 274 84.43 b.47.1.1 138932 2zbvA 263 85.05 1q3lA 69 85.76 b.34.13.2 111652 1vhyA 257 87.98 b.122.1.2,c.116.1.5 100714,100715 1pl8A 356 88.10 b.35.1.2,c.2.1.1 94878,94879 1s4cA 155 89.38 b.82.2.7 118860