# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2b0vA	153	2.291	d.113.1.1	127650
2hqxA	246	4.243	b.34.9.1	136675
2yrvA	117	5.149		
2qqrA	118	6.697		
1q5yA	85	15.02	d.58.18.4	95950
2dyqA	144	16.98		
1am2A	199	17.71	b.86.1.2	28381
2dkoB	103	19.24		
1kjwA	295	19.36	b.34.2.1,c.37.1.1	68643,68644
1llaA	628	19.45	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2bkdN	134	23.34		
1em2A	229	23.42	d.129.3.2	41321
1v2xA	194	24.33	c.116.1.1	100274
1gvhA	396	25.67	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1sc3A	178	26.44	c.17.1.1	105416
2j01E	206	28.22		
1ryaA	160	29.03	d.113.1.5	105122
1fd9A	213	30.64	d.26.1.1	59771
1sc3B	88	34.67		
1i8dA	213	34.98	b.43.4.3,b.43.4.3	61953,61954
2gfaA	119	35.23	b.34.9.1,b.34.9.1	135089,135090
1ok0A	74	35.95	b.5.1.1	93191
1l5wA	796	36.78	c.87.1.4	73605
1kzlA	208	39.47	b.43.4.3,b.43.4.3	77635,77636
1krhA	338	40.14	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1qxyA	252	40.38	d.127.1.1	96565
2f5vA	595	42.37	c.3.1.2,d.16.1.1	133010,133011
1v0aA	178	44.76	b.18.1.30	119815
1xcbA	211	49.11	a.4.5.38,c.2.1.12	109552,109553
1pyoB	105	50.24		
1vqoB	338	51.61	b.43.3.2	120363
2z2iA	191	53.17		
1s96A	219	53.21	c.37.1.1	98740
2asuB	234	56.00		
1vqoA	240	56.49	b.34.5.3,b.40.4.5	120361,120362
1q46A	175	58.58	a.60.14.1,b.40.4.5	111594,111595
1w30A	201	58.65	c.61.1.1	114118
3bjeA	349	60.59		
2qpwA	149	63.80		
1zxfA	155	67.45	d.129.3.5	125771
1zc1A	208	67.62		
1n6aA	259	68.90	b.76.2.1,b.85.7.1	80121,80122
1vmaA	306	71.02	a.24.13.1,c.37.1.10	108887,108888
3bn1A	373	71.27		
1cfbA	205	71.29	b.1.2.1,b.1.2.1	21991,21992
1gx3A	284	71.54	d.3.1.5	70678
2ca9A	148	72.99		
2pthA	193	74.01	c.56.3.1	33793
1lnsA	763	76.64	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
3cc1A	433	77.33		
1qtnB	95	77.47		
2vsmA	416	80.81		
2bjrA	368	81.47	b.169.1.1,b.169.1.1	128628,128629
2a19A	175	81.80		
2gt1A	326	81.83		
1wguA	136	85.51	b.55.1.2	114623
1pfbA	55	86.49	b.34.13.2	94655
1g0sA	209	87.46	d.113.1.1	60187
1twfB	1224	89.53	e.29.1.1	112726