# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hqxA 246 2.231 b.34.9.1 136675 2qqrA 118 2.248 2yrvA 117 2.668 2b0vA 153 8.708 d.113.1.1 127650 2gfaA 119 13.56 b.34.9.1,b.34.9.1 135089,135090 1llaA 628 13.99 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2dyqA 144 14.56 1fd9A 213 14.76 d.26.1.1 59771 2bkdN 134 15.52 1am2A 199 16.37 b.86.1.2 28381 1gvhA 396 19.11 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1l5wA 796 20.47 c.87.1.4 73605 1em2A 229 21.11 d.129.3.2 41321 1krhA 338 22.45 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2dkoB 103 23.01 2rc5A 314 23.52 1v0aA 178 25.43 b.18.1.30 119815 2j01E 206 25.79 1q5yA 85 27.22 d.58.18.4 95950 1ok0A 74 27.77 b.5.1.1 93191 2arhA 203 28.49 d.108.1.9 127197 1sc3B 88 28.55 1s96A 219 30.94 c.37.1.1 98740 1kjwA 295 34.82 b.34.2.1,c.37.1.1 68643,68644 1zxfA 155 34.87 d.129.3.5 125771 1wgsA 133 35.75 b.34.13.3 114622 1v2xA 194 38.22 c.116.1.1 100274 1q46A 175 41.57 a.60.14.1,b.40.4.5 111594,111595 1n6aA 259 41.59 b.76.2.1,b.85.7.1 80121,80122 1wguA 136 42.49 b.55.1.2 114623 1ju3A 583 42.87 b.18.1.13,c.69.1.21 67300,67301 1xcbA 211 44.35 a.4.5.38,c.2.1.12 109552,109553 2z2iA 191 44.85 3bjeA 349 44.86 1twfB 1224 46.76 e.29.1.1 112726 2vsmA 416 50.72 1pyoB 105 52.37 1qtnB 95 52.44 2f5vA 595 52.99 c.3.1.2,d.16.1.1 133010,133011 1zc1A 208 53.57 1q6uA 245 54.56 d.26.1.1 95998 2hxwA 237 57.19 1nmeB 92 57.52 1w30A 201 57.81 c.61.1.1 114118 2cdpA 160 60.33 1kzlA 208 61.51 b.43.4.3,b.43.4.3 77635,77636 3bn1A 373 63.70 2a19A 175 64.45 1gx3A 284 65.55 d.3.1.5 70678 1vmaA 306 65.67 a.24.13.1,c.37.1.10 108887,108888 2pthA 193 67.67 c.56.3.1 33793 1ryaA 160 69.79 d.113.1.5 105122 1mhnA 59 70.44 b.34.9.1 84964 1vqoB 338 72.87 b.43.3.2 120363 2qpwA 149 73.70 1uscA 178 75.68 b.45.1.2 99860 1jmmA 377 76.16 b.30.6.1 71749 1sc3A 178 76.20 c.17.1.1 105416 1i8dA 213 76.48 b.43.4.3,b.43.4.3 61953,61954 1wfyA 104 76.67 d.15.1.5 114597 1uufA 369 77.47 b.35.1.2,c.2.1.1 100006,100007 1xjvA 294 78.06 b.40.4.3,b.40.4.3 115396,115397 2csgA 424 79.34 b.82.2.12 130768 1qxyA 252 81.93 d.127.1.1 96565 2bjrA 368 81.96 b.169.1.1,b.169.1.1 128628,128629 3d1cA 369 84.49 2f69A 261 85.83 b.76.2.1,b.85.7.1 133035,133036 1nnvA 110 86.06 d.17.7.1 92012 1pfbA 55 86.90 b.34.13.2 94655 1q3lA 69 87.96 b.34.13.2 111652 1cfbA 205 88.46 b.1.2.1,b.1.2.1 21991,21992 1hplA 449 88.95 b.12.1.2,c.69.1.19 23639,34787 1mi8A 158 89.58 b.86.1.2 91279