# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 0.9939 1mi8A 158 2.056 b.86.1.2 91279 2yrvA 117 2.165 1fd9A 213 3.314 d.26.1.1 59771 1llaA 628 3.877 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2e5yA 133 4.281 1i8dA 213 4.533 b.43.4.3,b.43.4.3 61953,61954 2dkoB 103 4.894 1am2A 199 5.009 b.86.1.2 28381 1kzlA 208 5.693 b.43.4.3,b.43.4.3 77635,77636 2hqxA 246 5.976 b.34.9.1 136675 1gwmA 153 6.451 b.18.1.19 83348 1sc3B 88 6.763 2qe7H 135 6.833 2e63A 170 7.064 1qtnB 95 7.172 2gfaA 119 7.916 b.34.9.1,b.34.9.1 135089,135090 1kjwA 295 7.997 b.34.2.1,c.37.1.1 68643,68644 1q6uA 245 9.763 d.26.1.1 95998 1pyoB 105 11.18 1g2qA 187 11.67 c.61.1.1 65117 1wgsA 133 11.95 b.34.13.3 114622 2b0vA 153 12.33 d.113.1.1 127650 1ryaA 160 12.64 d.113.1.5 105122 1em2A 229 12.79 d.129.3.2 41321 2arhA 203 13.23 d.108.1.9 127197 1jmmA 377 14.49 b.30.6.1 71749 1e5eA 404 14.95 c.67.1.3 59265 2am1A 454 15.44 2dyqA 144 16.36 1l5wA 796 16.48 c.87.1.4 73605 2bjrA 368 16.86 b.169.1.1,b.169.1.1 128628,128629 2cy7A 396 17.41 2okcA 445 17.91 1w4sA 174 18.01 2hd9A 145 18.04 2psoA 237 18.49 1gvhA 396 18.58 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1w7cA 747 18.76 1q5yA 85 18.90 d.58.18.4 95950 1mhnA 59 19.22 b.34.9.1 84964 1xjvA 294 19.50 b.40.4.3,b.40.4.3 115396,115397 1nmeB 92 20.46 2bkdN 134 20.57 2ok8A 316 22.07 1q3lA 69 22.47 b.34.13.2 111652 2o5fA 171 22.61 1vqoQ 96 24.48 b.34.5.1 120378 1krhA 338 25.37 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2ojwA 384 25.44 1t9fA 187 25.52 b.42.6.1 106710 1ok0A 74 25.63 b.5.1.1 93191 2cdpA 160 25.80 2f5kA 102 26.54 b.34.13.3 132995 1k5nB 100 26.63 b.1.1.2 77268 1bkf 107 28.02 2eveA 157 28.09 b.122.1.8 132427 1qxyA 252 28.78 d.127.1.1 96565 2a19A 175 29.20 2rc5A 314 29.85 1cfbA 205 29.91 b.1.2.1,b.1.2.1 21991,21992 1v0aA 178 30.22 b.18.1.30 119815 1at0A 145 30.69 b.86.1.1 28374 3d1cA 369 30.89 2rdeA 251 31.48 1uscA 178 31.85 b.45.1.2 99860 3bn1A 373 32.37 1z85A 234 32.76 2f3nA 76 33.46 a.60.1.2 132885 1wfyA 104 33.74 d.15.1.5 114597 2i8tA 167 34.26 2c71A 216 34.39 c.6.2.3 130017 2bneA 241 34.64 c.73.1.3 128824 2f23A 156 34.80 a.2.1.1,d.26.1.2 132797,132798 2eulA 156 34.91 a.2.1.1,d.26.1.2 132392,132393 1s96A 219 35.89 c.37.1.1 98740 1nmsA 249 36.10 c.17.1.1 85879 2egvA 229 36.74 2hbwA 235 37.82 3bjeA 349 39.48 1k2eA 156 40.08 d.113.1.1 72010 2h8gA 267 41.19 1uufA 369 41.65 b.35.1.2,c.2.1.1 100006,100007 1pfbA 55 42.20 b.34.13.2 94655 2qpwA 149 42.20 1vqoA 240 42.20 b.34.5.3,b.40.4.5 120361,120362 2evrA 246 42.97 b.34.11.3,d.3.1.16 132440,132441 3bodA 178 43.17 2o8jA 281 43.19 2r55A 231 43.20 1xcbA 211 44.37 a.4.5.38,c.2.1.12 109552,109553 2bsxA 253 44.83 c.56.2.1 129128 1at0 145 45.53 2z2iA 191 45.60 1am2 199 46.76 1ep3B 262 47.01 b.43.4.2,c.25.1.3 25664,31554 2j01E 206 48.32 1qcsA 211 48.58 b.52.2.3,d.31.1.1 26927,38461 1vc3B 97 49.26 1q6hA 224 49.64 d.26.1.1 95975 1ju3A 583 50.29 b.18.1.13,c.69.1.21 67300,67301 1r9hA 135 50.29 d.26.1.1 97260 2hc8A 113 51.83 2g3rA 123 52.73 b.34.9.1,b.34.9.1 134570,134571 1w30A 201 53.63 c.61.1.1 114118 1wmmA 145 53.80 b.122.1.8 121049 1nycA 111 54.15 b.61.2.2 92336 2oatA 439 54.33 c.67.1.4 34452 1xu1R 42 55.71 g.24.1.2 116036 2opkA 112 57.04 1twfB 1224 57.29 e.29.1.1 112726 2r6hA 290 57.45 1uz5A 402 57.51 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1jv1A 505 58.00 c.68.1.5 71892 2gt1A 326 58.55 2o1cA 150 59.43 1yrzA 528 60.17 b.29.1.23,b.67.2.1 123948,123949 2uw1A 338 60.72 2pthA 193 62.03 c.56.3.1 33793 2pnlA 203 62.11 2bw4A 340 62.58 b.6.1.3,b.6.1.3 129320,129321 2va1A 256 63.35 3borA 237 63.72 2ee1A 64 64.13 2p5dA 147 64.22 2f60K 64 64.89 1c4rA 182 65.90 b.29.1.4 24229 1nofA 383 66.09 b.71.1.2,c.1.8.3 92020,92021 1wv3A 238 66.46 b.26.1.4,b.26.1.4 121318,121319 1xttA 216 66.65 c.61.1.1 122300 1rlwA 126 67.22 b.7.1.1 23177 1fdr 248 68.22 1jvwA 167 69.63 d.26.1.1 71907 1lluA 342 70.58 b.35.1.2,c.2.1.1 91064,91065 1bkb 136 71.31 2cb5A 453 71.32 d.3.1.1 37035 1u8xX 472 73.42 c.2.1.5,d.162.1.2 107741,107742 2ahoA 414 73.69 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1ynfA 458 73.86 d.126.1.7 123723 2qdxA 257 73.89 1q46A 175 74.77 a.60.14.1,b.40.4.5 111594,111595 1a8pA 258 77.02 b.43.4.2,c.25.1.1 25654,31544 1n6aA 259 78.76 b.76.2.1,b.85.7.1 80121,80122 2ej8A 160 79.10 2z1cA 75 79.17 1vqoB 338 79.96 b.43.3.2 120363 1vk9A 151 80.66 c.97.1.3 108640 1d2oA 187 81.40 b.3.5.1,b.3.5.1 22625,22626 1n8kA 374 84.12 b.35.1.2,c.2.1.1 80298,80299 1sacA 204 84.26 b.29.1.5 24237 2j5aA 110 86.03 1umkA 275 86.57 b.43.4.2,c.25.1.1 113312,113313 1oe1A 336 86.61 b.6.1.3,b.6.1.3 86891,86892 1f42A 306 87.60 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2jn9A 105 89.71 2qn6A 414 89.96