# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2b0vA	153	5.273	d.113.1.1	127650
2yrvA	117	7.120		
1llaA	628	10.47	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1em2A	229	12.68	d.129.3.2	41321
1am2A	199	16.04	b.86.1.2	28381
2dyqA	144	16.44		
2hqxA	246	17.28	b.34.9.1	136675
2qqrA	118	18.80		
2dkoB	103	21.62		
2j01E	206	21.71		
1sc3B	88	25.10		
2asuB	234	27.22		
1krhA	338	27.29	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2ojwA	384	27.58		
1gwmA	153	29.01	b.18.1.19	83348
1q0uA	219	32.92	c.37.1.19	95512
1dk8A	147	34.14	a.91.1.1	18548
1pyoB	105	34.98		
2gfaA	119	35.46	b.34.9.1,b.34.9.1	135089,135090
1kjwA	295	35.64	b.34.2.1,c.37.1.1	68643,68644
1jmmA	377	36.23	b.30.6.1	71749
1vqoB	338	36.75	b.43.3.2	120363
1v0aA	178	37.32	b.18.1.30	119815
1i8dA	213	39.44	b.43.4.3,b.43.4.3	61953,61954
1q5yA	85	39.45	d.58.18.4	95950
1ok0A	74	39.68	b.5.1.1	93191
1ni5A	433	39.78	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
3bjeA	349	41.24		
1kzlA	208	42.28	b.43.4.3,b.43.4.3	77635,77636
1zxfA	155	43.37	d.129.3.5	125771
1qtnB	95	44.66		
3borA	237	45.94		
1s96A	219	46.80	c.37.1.1	98740
1m7xA	617	47.37	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2hxwA	237	48.35		
1vqoA	240	49.90	b.34.5.3,b.40.4.5	120361,120362
1l5wA	796	51.80	c.87.1.4	73605
1v2xA	194	52.22	c.116.1.1	100274
1gvhA	396	54.72	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2okcA	445	56.21		
1cfbA	205	57.31	b.1.2.1,b.1.2.1	21991,21992
2bjrA	368	58.72	b.169.1.1,b.169.1.1	128628,128629
1fd9A	213	58.91	d.26.1.1	59771
2f5vA	595	59.89	c.3.1.2,d.16.1.1	133010,133011
1sc3A	178	62.79	c.17.1.1	105416
1ryaA	160	64.44	d.113.1.5	105122
2oatA	439	65.33	c.67.1.4	34452
1vmaA	306	66.80	a.24.13.1,c.37.1.10	108887,108888
2gxqA	207	67.77		
1twfB	1224	68.03	e.29.1.1	112726
2e27H	126	70.09		
3bn1A	373	70.56		
2cy7A	396	71.34		
1qqp2	218	73.50		
2ok8A	316	74.70		
1wguA	136	78.46	b.55.1.2	114623
2a74B	188	80.18		
1qxyA	252	81.89	d.127.1.1	96565
1k2eA	156	82.76	d.113.1.1	72010
2r55A	231	82.86		
1uufA	369	85.37	b.35.1.2,c.2.1.1	100006,100007
1uz5A	402	85.66	b.85.6.1,b.103.1.1,c.57.1.2	100217,100218,100219
2f3nA	76	86.89	a.60.1.2	132885
1w4sA	174	86.91		
2csgA	424	88.72	b.82.2.12	130768