# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2b0vA	153	7.372	d.113.1.1	127650
2yrvA	117	7.507		
1llaA	628	9.587	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2dyqA	144	15.18		
2dkoB	103	16.22		
1q5yA	85	17.46	d.58.18.4	95950
2hqxA	246	18.38	b.34.9.1	136675
2qqrA	118	20.00		
1sc3B	88	20.26		
1am2A	199	22.78	b.86.1.2	28381
2j01E	206	24.05		
3bjeA	349	24.24		
1krhA	338	25.43	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1em2A	229	25.84	d.129.3.2	41321
1dk8A	147	27.67	a.91.1.1	18548
1pyoB	105	28.42		
1v0aA	178	29.51	b.18.1.30	119815
1gwmA	153	32.28	b.18.1.19	83348
1qtnB	95	33.14		
1ryaA	160	33.59	d.113.1.5	105122
2asuB	234	34.73		
2gfaA	119	35.64	b.34.9.1,b.34.9.1	135089,135090
1vqoB	338	35.93	b.43.3.2	120363
1zxfA	155	36.54	d.129.3.5	125771
1kjwA	295	37.55	b.34.2.1,c.37.1.1	68643,68644
1gvhA	396	38.15	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1v2xA	194	38.32	c.116.1.1	100274
1i8dA	213	38.42	b.43.4.3,b.43.4.3	61953,61954
1jmmA	377	39.35	b.30.6.1	71749
1s96A	219	40.48	c.37.1.1	98740
1kzlA	208	42.15	b.43.4.3,b.43.4.3	77635,77636
2ojwA	384	43.98		
1vmaA	306	48.67	a.24.13.1,c.37.1.10	108887,108888
1ni5A	433	48.68	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1fd9A	213	52.09	d.26.1.1	59771
2okcA	445	55.47		
1wguA	136	55.90	b.55.1.2	114623
1w30A	201	56.42	c.61.1.1	114118
1twfB	1224	57.90	e.29.1.1	112726
2cy7A	396	59.95		
1sc3A	178	65.83	c.17.1.1	105416
2hxwA	237	65.89		
1ml4A	308	67.62	c.78.1.1,c.78.1.1	79255,79256
1uufA	369	67.91	b.35.1.2,c.2.1.1	100006,100007
2z2iA	191	68.49		
2ca9A	148	72.34		
1q0uA	219	74.52	c.37.1.19	95512
1l5wA	796	75.27	c.87.1.4	73605
1xcbA	211	75.55	a.4.5.38,c.2.1.12	109552,109553
3bn1A	373	76.20		
1ok0A	74	77.09	b.5.1.1	93191
1m7xA	617	80.20	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2ok8A	316	80.34		
2cb5A	453	84.06	d.3.1.1	37035
1vqoA	240	86.18	b.34.5.3,b.40.4.5	120361,120362
2f5vA	595	86.43	c.3.1.2,d.16.1.1	133010,133011
3borA	237	87.64		
1cfbA	205	88.44	b.1.2.1,b.1.2.1	21991,21992
1nycA	111	89.34	b.61.2.2	92336