# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2b0vA	153	5.483	d.113.1.1	127650
2yrvA	117	7.146		
1llaA	628	10.07	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1em2A	229	11.65	d.129.3.2	41321
2dkoB	103	12.99		
2dyqA	144	16.57		
1am2A	199	17.62	b.86.1.2	28381
1sc3B	88	18.05		
2hqxA	246	19.22	b.34.9.1	136675
2qqrA	118	21.30		
1q5yA	85	23.81	d.58.18.4	95950
1dk8A	147	25.21	a.91.1.1	18548
3bjeA	349	27.11		
1pyoB	105	27.30		
2j01E	206	29.98		
1v0aA	178	31.66	b.18.1.30	119815
1qtnB	95	32.58		
1i8dA	213	32.95	b.43.4.3,b.43.4.3	61953,61954
1jmmA	377	33.05	b.30.6.1	71749
2ojwA	384	33.15		
2cy7A	396	33.83		
1vqoB	338	37.72	b.43.3.2	120363
2asuB	234	38.21		
1ryaA	160	39.47	d.113.1.5	105122
1gwmA	153	41.62	b.18.1.19	83348
1m7xA	617	42.45	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1kzlA	208	42.80	b.43.4.3,b.43.4.3	77635,77636
1krhA	338	43.07	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2okcA	445	43.87		
1zxfA	155	45.38	d.129.3.5	125771
1sc3A	178	48.27	c.17.1.1	105416
1ni5A	433	48.87	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2f5vA	595	50.02	c.3.1.2,d.16.1.1	133010,133011
1kjwA	295	51.79	b.34.2.1,c.37.1.1	68643,68644
2gfaA	119	53.35	b.34.9.1,b.34.9.1	135089,135090
1fd9A	213	55.21	d.26.1.1	59771
1ok0A	74	57.19	b.5.1.1	93191
1nmeB	92	60.75		
1qqp2	218	61.20		
2r55A	231	63.05		
1q0uA	219	63.12	c.37.1.19	95512
2hxwA	237	64.19		
1qxyA	252	66.63	d.127.1.1	96565
1s96A	219	66.70	c.37.1.1	98740
1v2xA	194	67.76	c.116.1.1	100274
1vqoA	240	69.74	b.34.5.3,b.40.4.5	120361,120362
1gvhA	396	70.68	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1cfbA	205	71.55	b.1.2.1,b.1.2.1	21991,21992
1wguA	136	77.30	b.55.1.2	114623
1l5wA	796	78.73	c.87.1.4	73605
2cb5A	453	80.88	d.3.1.1	37035
2ok8A	316	82.68		
3bn1A	373	84.18		
1w30A	201	84.73	c.61.1.1	114118
2dh2A	424	85.23		
1ybyA	215	85.98		
2a74B	188	87.64		
1vmaA	306	87.90	a.24.13.1,c.37.1.10	108887,108888