# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dk8A	147	2.544	a.91.1.1	18548
2dkoB	103	4.340		
1kjwA	295	5.101	b.34.2.1,c.37.1.1	68643,68644
2bkdN	134	6.690		
1mhnA	59	6.771	b.34.9.1	84964
2dyqA	144	6.787		
2yrvA	117	6.880		
2qqrA	118	9.96		
2hqxA	246	11.66	b.34.9.1	136675
2e5yA	133	14.46		
1wguA	136	15.02	b.55.1.2	114623
1pyoB	105	16.97		
1sc3B	88	18.21		
2j01E	206	18.30		
1nnvA	110	25.73	d.17.7.1	92012
2arhA	203	32.13	d.108.1.9	127197
2o5fA	171	33.04		
1fs0E	138	33.47	a.2.10.1,b.93.1.1	59997,59998
2cwpA	112	35.22		
1sc3A	178	37.91	c.17.1.1	105416
1am2A	199	41.42	b.86.1.2	28381
1nmeB	92	43.21		
1vqoB	338	43.27	b.43.3.2	120363
2gjgA	248	43.68		
1oyzA	280	44.85	a.118.1.16	93775
2qe7H	135	48.16		
1pfbA	55	50.10	b.34.13.2	94655
1j1nA	492	52.09	c.94.1.1	83978
2bneA	241	53.13	c.73.1.3	128824
1wgsA	133	54.66	b.34.13.3	114622
2p0pA	126	59.90		
2egvA	229	60.21		
1ok0A	74	62.54	b.5.1.1	93191
2rdeA	251	62.73		
1n6aA	259	63.15	b.76.2.1,b.85.7.1	80121,80122
1vqoQ	96	63.54	b.34.5.1	120378
1q3lA	69	63.80	b.34.13.2	111652
3bjeA	349	63.89		
1lshA	1056	64.23	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2a19A	175	64.63		
1xcbA	211	66.58	a.4.5.38,c.2.1.12	109552,109553
1fuiA	591	66.82	b.43.2.1,c.85.1.1	25674,35444
2alaA	391	67.63	b.1.18.4,f.10.1.1	126973,126974
1q5yA	85	67.97	d.58.18.4	95950
2bemA	170	68.21	b.1.18.2	116698
1aohA	147	69.65	b.2.2.2	22401
2c71A	216	71.22	c.6.2.3	130017
2hd9A	145	73.29		
1z85A	234	79.65		
2jn9A	105	83.49		
2ov6A	101	87.16		
1w0hA	204	87.59	c.55.3.5	114064
2f4mA	295	89.91